Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0374 ATGGCGATCCTGTACGCCTTGGTGGCGAGAGCCTCAGTGGTTCTTGCCGAGTTCAGCGCTGTCACCGGAAACACGGGCGCCGTGGCCCGCCGCTTACTCGAGAAGCTTCCGGCGGAGGACGACTCCAGGCTCTGTTTCTCTCAGGATCGCTACATATTTCACATACTCCGATCCGATATGGCCAACGATAACTTTGGCAGGGGCATCCCTTTTTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTATGGCAGAGTGGCCAATTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCACCAAATGGAGCTTTTCTCTAGTAATTCTAGTACCGACACCCTCAATCGTGTGAGGGGTGAAGTTGGTGAGATACGAACTATCATGGTGGATAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAACTTCTTGTTGATAAGACATCAACAATGCAAGACAGTGCATTTCACTTTAGGAAGCAGTCAAAGCGCCTTCAAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGGTGCTAATGACACTCTTGATTGTTCTCTTCCTTTACCTTATAATTGCTGCGTGTTGTGGAGGCATCACTCTACCATCATGTAGATCCTAA 645 0.4605 MAILYALVARASVVLAEFSAVTGNTGAVARRLLEKLPAEDDSRLCFSQDRYIFHILRSDMANDNFGRGIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHHQMELFSSNSSTDTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTSTMQDSAFHFRKQSKRLQRALWMKNFKLLVLMTLLIVLFLYLIIAACCGGITLPSCRS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0374 214 CDD Longin 4 112 IPR010908 -
Lan7g0374 214 PRINTS Synaptobrevin signature 125 144 IPR001388 GO:0016021|GO:0016192
Lan7g0374 214 PRINTS Synaptobrevin signature 145 164 IPR001388 GO:0016021|GO:0016192
Lan7g0374 214 PRINTS Synaptobrevin signature 181 200 IPR001388 GO:0016021|GO:0016192
Lan7g0374 214 Gene3D Longin domain 1 117 - -
Lan7g0374 214 SUPERFAMILY SNARE-like 3 111 IPR011012 -
Lan7g0374 214 Pfam Regulated-SNARE-like domain 29 102 IPR010908 -
Lan7g0374 214 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 120 180 IPR042855 -
Lan7g0374 214 ProSiteProfiles Longin domain profile. 7 105 IPR010908 -
Lan7g0374 214 ProSitePatterns Synaptobrevin signature. 138 157 IPR001388 GO:0016021|GO:0016192
Lan7g0374 214 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 213 - -
Lan7g0374 214 Gene3D - 118 203 - -
Lan7g0374 214 SMART Longin_2 28 104 IPR010908 -
Lan7g0374 214 CDD R-SNARE 119 178 - -
Lan7g0374 214 PANTHER SNARE PROTEINS 1 213 - -
Lan7g0374 214 SUPERFAMILY SNARE fusion complex 115 182 - -
Lan7g0374 214 Pfam Synaptobrevin 118 205 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0374 Lan-Chr7 2546923 2550334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0374 1 214 Miscellaneous Gene Families AT5G22360 79.638 2.42e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0374 K08515 - gmx:100780787 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0374 7 2546923 2550334 Lan7g0374 7 2546923 2550334 ECH
Lan7g0374 7 2546923 2550334 Lan8g1588 8 22900289 22903024 LSH
Lan7g0374 7 2546923 2550334 Lan13g0437 13 3162909 3179182 LSH