Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0437 ATGGCGATCCTGTACGCCTTGGTGACGAGATCCACGGTGGTGTTAGCCGAGTTCAGCGCCGTCACCGGCAATACAGGCGCTGTAGCCCGCCGCTTACTCGAGAAGCTTCCGGCGGAGACCGATTCCAGGCTCTGTTTCTCTCAGGATCGCTACATATTTCACATACTCCGATTTGATTGCCTCACCTTCCTCTGTATGGCCAACGATACATTTGGTAGGAGAATCCCTTTTTCATACTTAGAAGATATCCAAATGAGATTCATGAAGAACTATGGTAGAGTGGCCAATTGCGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTACATCAGCAAATGGAAGTTTTTTCTAGAAATCATAGTACTGATACCCTTAATCGTGTGAGGGGTGAAGTTGGTGAGATACACACTATCATGATGGATAATATTGAGAAAATATTGGAGAGAGGTGATCGGATTGAACTTTTAGTTGATAAGACATCAACAATGCAAGACAGTGCATTTCACTTTAGGAAGCAGTCAAAACGCCTTCGAAGAGCTCTTTGGATTAAAAATTTCAAACTCCTGGTGCTGTTGACACTCTTGATTGTTCTCTTTCTTTACCTTATAATCGCTGCTTGTTGTGGAGGTATCACTCTACCGTCGTGTGGATCGTAA 663 0.4374 MAILYALVTRSTVVLAEFSAVTGNTGAVARRLLEKLPAETDSRLCFSQDRYIFHILRFDCLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANCAPAYAMNDEFSRVLHQQMEVFSRNHSTDTLNRVRGEVGEIHTIMMDNIEKILERGDRIELLVDKTSTMQDSAFHFRKQSKRLRRALWIKNFKLLVLLTLLIVLFLYLIIAACCGGITLPSCGS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0437 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Lan13g0437 220 PANTHER SNARE PROTEINS 1 219 - -
Lan13g0437 220 Pfam Synaptobrevin 124 211 IPR042855 -
Lan13g0437 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Lan13g0437 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Lan13g0437 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Lan13g0437 220 CDD R-SNARE 125 184 - -
Lan13g0437 220 SUPERFAMILY SNARE fusion complex 122 188 - -
Lan13g0437 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Lan13g0437 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Lan13g0437 220 CDD Longin 4 118 IPR010908 -
Lan13g0437 220 Gene3D Longin domain 1 124 - -
Lan13g0437 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Lan13g0437 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Lan13g0437 220 SMART Longin_2 28 110 IPR010908 -
Lan13g0437 220 Gene3D - 125 209 - -
Lan13g0437 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0437 Lan-Chr13 3162909 3179182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0437 1 220 Miscellaneous Gene Families AT5G22360 81.448 1.45e-133 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0437 K08515 - gmx:100780787 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0374 7 2546923 2550334 Lan13g0437 13 3162909 3179182 LSH
Lan8g1588 8 22900289 22903024 Lan13g0437 13 3162909 3179182 LSH