Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1540 ATGGATTCTAATTCTGTTCATGACCATGTTTCTCAACCTTTGTTAATCCCTAGTGAAATTCCACCCCCTTCAATAACTCAATCATTCAGCTCAAATCATGAATCAAATGGTGAACTTGAGAGAATACTCTCAGACACAAGTGTTCCTCTACTAAAGCGTTTTGGACTTGCTACATGGATTGAATTCAAGCTTCTATTTTTTCTTGCTGCTCCTGCTGTTATTGTGTACCTTATAAACTATATCATGTCTATGTCTACACAAATATTCTCTGGTCACCTTGGTAATCTTGAACTTGCTGCTGCTTCTCTTGGTAACACTGGTATTCAAGTCTTTGCTTATGGCCTCATGTTAGGTATGGGAAGTGCTGTTGAGACACTATGTGGACAAGCATATGGAGCACAAAAGTTGGAAATGTTAGGCATATACTTACAAAGATCTACTGTTCTTCTCACATTAGCTGGTGTTATTTTAACTGTGATATATGCCTTCTCCAAACCAATTTTAATCTTTTTAGGAGAGTCTCCAAGAATTGCATCAGCAGCTTCACTCTTTGTCTTTGGCCTAATACCTCAAATATTTGCCTATGCTATAAACTTCCCTATTCAGAAGTTTCTTCAAGCTCAAAGCATAGTGGCTCCAAGTGCATATATATCAACAGCAACATTATTCATCCACATATTGTTGAGTTGGGTGGTTGTGTATAAAATTGGGCTTGGTTTATTAGGTGCATCATTGGTTTTGAGCTTCTCATGGTGGATCATTGTGATTGCACAGTTTGTGTATATTGTGAAGAGTGAAAAGTGTAAGAGGACATGGAGAGGGTTCACAGTACAAGCTTTTTCAGGGTTGCCAGAGTTTTTCAAGTTATCAGCAGCATCAGCAGTTATGCTGTGTTTGGAGACATGGTACTTTCAAATTTTGGTTTTGCTTGCTGGGCTACTTCCTAACCCTGAGATTGCTCTTGATTCACTTTCCATTTGTACTACAGTGTCTGGATGGGTGTTCATGATTTCAGTTGGATTTAATGCAGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCCAAAAATCCAAAATCAGCCTCATTTTCAGTATTGGTTGTGACATTGATTTCTTTCATAATATCGGCTATTATAGCACTTGTGGTGCTTGCATTAAGGGATGTTATCAGTTATGTCTTCACAGAGGGTGAAGTAGTTGCTGCTGCTGTCTCAGATCTTTGTCCCCTCTTATCTCTTGCAATTCTCCTCAATGGCATTCAGCCTGTCTTATCTGGGGTGGCTGTTGGATGCGGATGGCAAACATTTGTTGCCTATGTTAACGTTGGTTGTTATTATGGAATTGGCATACCCTTGGGTTCGGTTCTCGGTTTCTATTTCAATTTTGGTGCTAAGGGAATATGGTTGGGAATGCTAGGTGGCACGGTTTTGCAAACAATTATTTTAGTGTGGGTCACATTTCGAACCGATTGGAATAAAGAGGTTGAAGAAGCAGCTAAGAGGTTGAACAAATGGGAAGACAAGACGGAACCACTTCTCAAGAACTGA 1548 0.3992 MDSNSVHDHVSQPLLIPSEIPPPSITQSFSSNHESNGELERILSDTSVPLLKRFGLATWIEFKLLFFLAAPAVIVYLINYIMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAQKLEMLGIYLQRSTVLLTLAGVILTVIYAFSKPILIFLGESPRIASAASLFVFGLIPQIFAYAINFPIQKFLQAQSIVAPSAYISTATLFIHILLSWVVVYKIGLGLLGASLVLSFSWWIIVIAQFVYIVKSEKCKRTWRGFTVQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPNPEIALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGAKNPKSASFSVLVVTLISFIISAIIALVVLALRDVISYVFTEGEVVAAAVSDLCPLLSLAILLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVLGFYFNFGAKGIWLGMLGGTVLQTIILVWVTFRTDWNKEVEEAAKRLNKWEDKTEPLLKN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1540 515 Pfam MatE 71 231 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lan8g1540 515 Pfam MatE 293 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lan8g1540 515 CDD MATE_eukaryotic 61 497 IPR045069 GO:0042910|GO:1990961
Lan8g1540 515 TIGRFAM matE: MATE efflux family protein 71 468 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lan8g1540 515 Coils Coil 488 508 - -
Lan8g1540 515 MobiDBLite consensus disorder prediction 1 32 - -
Lan8g1540 515 PANTHER PROTEIN DETOXIFICATION 17 502 - -
Lan8g1540 515 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1540 Lan-Chr8 22465920 22472094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1540 K03327 - gmx:100801718 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1540 8 22465920 22472094 Lan8g1540 8 22465920 22472094 ECH
Lan6g1881 6 29897132 29903769 Lan8g1540 8 22465920 22472094 PCT
Lan10g0031 10 174897 179171 Lan8g1540 8 22465920 22472094 PCT
Lan8g1540 8 22465920 22472094 Lan6g1881 6 29897132 29903769 PCT
Lan8g1540 8 22465920 22472094 Lan10g0031 10 174897 179171 PCT