Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0193 ATGGACCCTAGTGAATTGAAGCGTGTGTTCCAAATGTTTGACCGTGATGGGGATGGAAGAATAAGCAAGAAGGAGTTGAAGGATTCGATGGAGAAGCTAGGAATGATGATACCCGATAAGGAGTTAACACAAATGATAGAGAAAATAGATGTGAATGGTGATGGTTGGGTTGATATGGAAGAGTTCGGAGAGTTGTATGAGTCGATCATGGAAGAGCGCGATGAAGAAGAAGATATGAGGGAAGCATTCAATGTGTTTGATCACAACCACGATGGTTTCATCACGGTTGAGGAACTAAGGACCGTTTTGTCATCTCTAGGACTCAAGCAAGGAAGAACCGTCGAAGAATGCAAGAAAATGATAATGAAGGTGGATGTTGATGGAGATGGAATGGTTAATTACAAGGAGTTCAAGCAAATGATGAAGGGTGGAGGCTTTAGTGCTCTTGGATAA 453 0.4216 MDPSELKRVFQMFDRDGDGRISKKELKDSMEKLGMMIPDKELTQMIEKIDVNGDGWVDMEEFGELYESIMEERDEEEDMREAFNVFDHNHDGFITVEELRTVLSSLGLKQGRTVEECKKMIMKVDVDGDGMVNYKEFKQMMKGGGFSALG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0193 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Lan7g0193 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lan7g0193 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Lan7g0193 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lan7g0193 150 Gene3D - 3 65 - -
Lan7g0193 150 PANTHER CALMODULIN-LIKE PROTEIN 3 1 149 - -
Lan7g0193 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lan7g0193 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lan7g0193 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Lan7g0193 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Lan7g0193 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lan7g0193 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lan7g0193 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Lan7g0193 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lan7g0193 150 CDD EFh 82 142 IPR002048 GO:0005509
Lan7g0193 150 Gene3D - 66 144 - -
Lan7g0193 150 CDD EFh 5 62 IPR002048 GO:0005509
Lan7g0193 150 SMART efh_1 5 33 IPR002048 GO:0005509
Lan7g0193 150 SMART efh_1 41 69 IPR002048 GO:0005509
Lan7g0193 150 SMART efh_1 116 144 IPR002048 GO:0005509
Lan7g0193 150 SMART efh_1 78 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0193 Lan-Chr7 1170400 1171461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0193 1 150 EF-hand Containing Proteins AT3G07490 79.333 1.44e-77 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0193 K13448 - csv:101210877 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2172 6 32131500 32131820 Lan7g0193 7 1170400 1171461 PCT
Lan3g0254 3 1648142 1648996 Lan7g0193 7 1170400 1171461 PCT