Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2172 ATGATCGAGAAGATTGATGTTAACCATGATGGTTGCGTAGACATTGATGAATTCGGTGAGTTGTATAAATCCATCATGGATGATCGCGATGAAGAGGAGGATATGAGGGAGGCATTCAACGTTTTCGACCAAAACGGCGATGGGTTCATATCCGTGGAAGAGTTGAGATCGGTTTTGTCGTCGCTAGGGTTGAAACAAGGAAGAACGGTTGAGGATTGCAAGAAGATGATCATGAAGGTTGATGTTGATGGAGATGGAATGGTGGATTATAAAGAGTTCAAGCAAATGATGAAAGGTGGTGGCTTTAGTGCTCTAAGTTAA 321 0.4237 MIEKIDVNHDGCVDIDEFGELYKSIMDDRDEEEDMREAFNVFDQNGDGFISVEELRSVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2172 106 ProSiteProfiles EF-hand calcium-binding domain profile. 1 28 IPR002048 GO:0005509
Lan6g2172 106 ProSitePatterns EF-hand calcium-binding domain. 6 18 IPR018247 -
Lan6g2172 106 ProSitePatterns EF-hand calcium-binding domain. 43 55 IPR018247 -
Lan6g2172 106 Pfam EF-hand domain pair 32 98 IPR002048 GO:0005509
Lan6g2172 106 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Lan6g2172 106 Gene3D - 1 59 - -
Lan6g2172 106 CDD EFh 34 98 IPR002048 GO:0005509
Lan6g2172 106 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 106 - -
Lan6g2172 106 SMART efh_1 72 100 IPR002048 GO:0005509
Lan6g2172 106 SMART efh_1 34 62 IPR002048 GO:0005509
Lan6g2172 106 SMART efh_1 1 25 IPR002048 GO:0005509
Lan6g2172 106 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 106 - -
Lan6g2172 106 SUPERFAMILY EF-hand 1 100 IPR011992 -
Lan6g2172 106 Pfam EF hand 3 21 IPR002048 GO:0005509
Lan6g2172 106 CDD EFh 1 60 IPR002048 GO:0005509
Lan6g2172 106 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Lan6g2172 106 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Lan6g2172 106 Gene3D - 60 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2172 Lan-Chr6 32131500 32131820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2172 31 98 EF-hand Containing Proteins AT1G05990 39.706 4.10e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2172 K13448 - csv:101210877 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2172 6 32131500 32131820 Lan3g0254 3 1648142 1648996 LSH
Lan6g2172 6 32131500 32131820 Lan7g0193 7 1170400 1171461 PCT