Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0254 ATGGATCCTACTGAACTCAAGCGAATTTTCCACCTCTTTGATCGTAATGGTGATGGCCGAATCACGAAGAAGGAGCTAAATGATTCCCTTGAGAACTTAAGCATTTTCATCCCAGACAACGAGTTAACAAAAATGATTGAGAAGATCGATGTCAATGGCGATGGTTGCATGGACATAGATGAATTTGGTGAGTTGTATCTATCCATCATCGAAGATCGTGATGAGGAGAAGGACATGAAGGAGGCATTCAACGTGTTCGATCAAAACCGTGATGGGTTCATTACAGTTGAAGAGTTGAGATCGGTTTTTGCATCTCTAGGGTTGAAACAAGGAAGAACGGTTGAGGATTGTAAGAAGATGATAATGAAGGTTGATGTTGATGGAGATGGAATGGTGGATTATAATGAGTTCAAGCAAATGATGAAAGGTGGTGGATTCAATGCTCTAAGTTAA 453 0.404 MDPTELKRIFHLFDRNGDGRITKKELNDSLENLSIFIPDNELTKMIEKIDVNGDGCMDIDEFGELYLSIIEDRDEEKDMKEAFNVFDQNRDGFITVEELRSVFASLGLKQGRTVEDCKKMIMKVDVDGDGMVDYNEFKQMMKGGGFNALS* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0254 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Lan3g0254 150 SMART efh_1 78 106 IPR002048 GO:0005509
Lan3g0254 150 SMART efh_1 41 69 IPR002048 GO:0005509
Lan3g0254 150 SMART efh_1 5 33 IPR002048 GO:0005509
Lan3g0254 150 SMART efh_1 116 144 IPR002048 GO:0005509
Lan3g0254 150 CDD EFh 78 142 IPR002048 GO:0005509
Lan3g0254 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lan3g0254 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 150 - -
Lan3g0254 150 Gene3D - 2 69 - -
Lan3g0254 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 150 - -
Lan3g0254 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lan3g0254 150 Gene3D - 70 145 - -
Lan3g0254 150 SUPERFAMILY EF-hand 5 144 IPR011992 -
Lan3g0254 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lan3g0254 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Lan3g0254 150 Pfam EF-hand domain pair 77 142 IPR002048 GO:0005509
Lan3g0254 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lan3g0254 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lan3g0254 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lan3g0254 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0254 Lan-Chr3 1648142 1648996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0254 1 150 EF-hand Containing Proteins AT3G07490 78.000 1.55e-75 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0254 K13448 - zju:107422102 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2172 6 32131500 32131820 Lan3g0254 3 1648142 1648996 LSH
Lan3g0254 3 1648142 1648996 Lan7g0193 7 1170400 1171461 PCT