Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2128 ATGAACGGTGGCGATGAGGTCATCGCAGCTCCGGCGGGCCCACCAAACCCACTGGATTGGAAATTCTCGCAGGTTTTCGGAGAACGTACGGCAGGGGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATTGAATTTTACAAGTCCGGTGATTATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTCTTTGAAAGGACAGATACAAAAGATCATGGTGGATCAAGAAGAGATTCGGAGAGAATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGATTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGCGCCCTCTTTCTTCTTTCAACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTCGACCCTTTGAAAGGAACGGGAAATGGCTCTATTGCTAGTTCAAGTAGTTCCGCAATTCATCTTGCAAATGGAGGATCTCAAGAAGGATACCTAAGCAATGATTTCTCATTTCCACCAGGAGGCATACCATCGCTAAGATTACCCACGGTAAGTAGCCATGAAACCAGCTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGACTATCATATAAATTCCATTTCAAATAACAGCGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCGAAGGGTTCTATTCGTCTTGTTGATTTGAGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAAGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACGGAGATTATTGCTTCTATCTCAGACATTAAATTTGGGAAGGGTGGAAGATACATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGATTCAGGGCCTGTCGCAACTTTCCAGGTTCATGAGTATTTACGACCTAAGCTTTGTGATTTATATGAAAATGACTCAATCTTTGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTAGCCACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGCGCTGAGGCGACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTATAACAAGAGTTGTAAGACGAGGAGCTGAAACCCCTGGCGTTGATGCAAATGGCAATTCTTTCGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAAAATGCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCCTAA 1530 0.4196 MNGGDEVIAAPAGPPNPLDWKFSQVFGERTAGEEVQEVDIISAIEFYKSGDYLATGDRGGRVVLFERTDTKDHGGSRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPLKGTGNGSIASSSSSAIHLANGGSQEGYLSNDFSFPPGGIPSLRLPTVSSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKGGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPTENAIACAAANSLYMYYA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 228 255 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 256 283 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 284 312 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 313 340 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 341 368 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 369 394 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 395 421 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 478 507 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 509 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 Gene3D - 76 507 IPR015943 GO:0005515
Lan6g2128 509 MobiDBLite consensus disorder prediction 437 456 - -
Lan6g2128 509 PIRSF PPA2_B55 11 509 IPR000009 GO:0000159|GO:0019888
Lan6g2128 509 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lan6g2128 509 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 509 - -
Lan6g2128 509 SMART WD40_4 31 66 IPR001680 GO:0005515
Lan6g2128 509 SMART WD40_4 368 422 IPR001680 GO:0005515
Lan6g2128 509 SMART WD40_4 267 307 IPR001680 GO:0005515
Lan6g2128 509 SMART WD40_4 105 145 IPR001680 GO:0005515
Lan6g2128 509 SMART WD40_4 217 256 IPR001680 GO:0005515
Lan6g2128 509 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lan6g2128 509 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 226 240 IPR018067 -
Lan6g2128 509 SUPERFAMILY WD40 repeat-like 39 501 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2128 Lan-Chr6 31764442 31772290 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2128 K04354 - gmx:100799449 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2128 6 31764442 31772290 Lan10g0280 10 1804073 1811328 LSH
Lan6g2128 6 31764442 31772290 Lan3g0221 3 1419884 1431355 LSH
Lan6g2128 6 31764442 31772290 Lan5g0609 5 12434951 12444070 PCT
Lan6g2128 6 31764442 31772290 Lan9g0644 9 9496077 9506180 PCT
Lan5g0609 5 12434951 12444070 Lan6g2128 6 31764442 31772290 PCT
Lan9g0644 9 9496077 9506180 Lan6g2128 6 31764442 31772290 PCT