Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0609 ATGAACGGTGGGGATGGGGTCGCCGCAGATGCTTCTCCGGCGGGTCCACCGCATCCTCTGGAGTGGAAATTCTCGCAGGTTTTTGGGGAACGTTCGGCTGGTGAAGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTAGGGTAGTTCTCTTTGAGAGGACAGATGTAAAAGATCATGGTGGATCAAGAAGCGATTTGGAGAGGATGGACTATTCTGCAAATAGACATCCTGATTTCCGTTATAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTACCTGAAGAGCTTGGAAATAGAAGAGAAAATAAACAAAATAAAATGGTGTCAAACCGCTAATGGTGCTGTCTTCCTTCTATCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAATGTCGACCCTTCAAAAGCAATGGGGAATGGTTCTGTTGGCAGTTCAAGTAGTTCCAGTAACTCGAGGCCGCATATTGCTAACGGAGTATCTCCAGATAGATCATACAGTTATCTAAGCAATGACTTCTCATTTCCACCAGGAGGCATACCTTCACTAAGATTACCCTCGGTAGTAACCAGCCATGAGACCAGTCTGATGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATATCAAATAACAGCGATGGTGAAACTTTCATATCAGCTGATGATCTCCGAATAAATCTTTGGAACCTGGAAATTTGTAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACGGAGGTTATAACATCGGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCATTTCGTCTCGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAAATATTTGAGGAACAAGAGCCCGCTGGGTCCAGATCATTTTTTACCGAGATTATTGCATCTATCTCTGACATAAAGTTTGGGAAGGAGGGAAGATATATACTTAGTCGTGATTACATGACTTTAAAGTTATGGGACATCAATATGGATTCCGGCCCAGTTTCAACGTTCCAGGTTCATGAGTATTTAAGACCGAAGCTTTGTGATTTATACGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTGCAACTGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGCTCCCCTGGAAGTACCGAGGCTACGACTTTGGAAGCCAGTAAAAACCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCGCTGGGAAACAGTATAACACGAGTTGTAAGACGAGGAGCCGAAAACACTGGTGTCGACGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCATTTAGCATGGCATCCAAGTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTAA 1557 0.4181 MNGGDGVAADASPAGPPHPLEWKFSQVFGERSAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDVKDHGGSRSDLERMDYSANRHPDFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNVDPSKAMGNGSVGSSSSSSNSRPHIANGVSPDRSYSYLSNDFSFPPGGIPSLRLPSVVTSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEICNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSFRLVDLRQSALCDSHAKIFEEQEPAGSRSFFTEIIASISDIKFGKEGRYILSRDYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAENTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0609 518 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 1 518 - -
Lan5g0609 518 MobiDBLite consensus disorder prediction 446 465 - -
Lan5g0609 518 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 1 518 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 107 121 IPR018067 -
Lan5g0609 518 MobiDBLite consensus disorder prediction 167 186 - -
Lan5g0609 518 Gene3D - 73 516 IPR015943 GO:0005515
Lan5g0609 518 MobiDBLite consensus disorder prediction 1 21 - -
Lan5g0609 518 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Lan5g0609 518 PIRSF PPA2_B55 14 518 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 235 249 IPR018067 -
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 47 67 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 94 122 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 123 151 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 264 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 265 292 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 293 321 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 322 349 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 350 377 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 378 403 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 404 430 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 487 516 IPR000009 GO:0000159|GO:0019888
Lan5g0609 518 MobiDBLite consensus disorder prediction 159 186 - -
Lan5g0609 518 SMART WD40_4 107 147 IPR001680 GO:0005515
Lan5g0609 518 SMART WD40_4 276 316 IPR001680 GO:0005515
Lan5g0609 518 SMART WD40_4 33 68 IPR001680 GO:0005515
Lan5g0609 518 SMART WD40_4 226 265 IPR001680 GO:0005515
Lan5g0609 518 SUPERFAMILY WD40 repeat-like 41 510 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0609 Lan-Chr5 12434951 12444070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0609 K04354 - gmx:100799449 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0609 5 12434951 12444070 Lan9g0644 9 9496077 9506180 LSH
Lan6g2128 6 31764442 31772290 Lan5g0609 5 12434951 12444070 PCT
Lan10g0280 10 1804073 1811328 Lan5g0609 5 12434951 12444070 PCT
Lan3g0221 3 1419884 1431355 Lan5g0609 5 12434951 12444070 PCT
Lan5g0609 5 12434951 12444070 Lan6g2128 6 31764442 31772290 PCT
Lan5g0609 5 12434951 12444070 Lan10g0280 10 1804073 1811328 PCT
Lan5g0609 5 12434951 12444070 Lan3g0221 3 1419884 1431355 PCT