Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0280 ATGAACGGTGCCGATGAGGTTGTTGCAGCTCCGGCGGGTCCACCAAACCCTCTGGATTGGAAATTCTCGCAGGTTTTCGGAGAACGTACGGCAGGGGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATTGAATTTTATAAGTCCGGTGATTATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTCTTTGAAAGGACAGATACAAAAAATCATGGTGACTCAAGAAGAGATTTGGAGAGGATGGACTATTCTATTACTAGGCATCCCGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTACCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCTCTCTTTCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTCGACCCTTCGAAAGGAACGGGAAATGGCTCTGTTGCCAGTTCAAGTAGTTCCACAATTCATCTTGCAAATGGGGGATCTCCAGAAAGATCAAATAACTATCTAAGCAATGACTTCTCATTTCCACCAGGAGGCATACCATCGCTAAGATTACCCACGGTAAGTAGTCATGAAACCAGCTTGGTGGCTCGTTGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCCATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTAGAAATTAGCAATCAAAGTTTTAACATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCGAAGGGTTCAATTCGTCTTGTTGACTTACGGCAATCAGCATTGTGTGACTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGACATAAAATTCGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGATTCAGGGCCCGTTGCAACTTTCCAGGTTCATGAGTATTTACGACCTAAGCTTTGTGATTTATATGAAAATGACTCAATCTTTGATAAGTTCGAGTGTTGTCTTAGTGGTGATGGGTTGCATGTAGCCACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGCGCAGAAGCCTCAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCGAGGCCTTCTAGATCACTGGGAAATAGTATAACAAGAGTTGTCAGACGAGGAGCAGAAACCCCTGGTATTGATGCAAATGGCAATTCATTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAAAATGCAATTGCTTGTGCTGCTGCTAATAGCTTGTACATGTACTATGCCTAA 1539 0.4152 MNGADEVVAAPAGPPNPLDWKFSQVFGERTAGEEVQEVDIISAIEFYKSGDYLATGDRGGRVVLFERTDTKNHGDSRRDLERMDYSITRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKGTGNGSVASSSSSTIHLANGGSPERSNNYLSNDFSFPPGGIPSLRLPTVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYSNLFRVFGCAPGSAEASTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAETPGIDANGNSFDFTTKLLHLAWHPTENAIACAAANSLYMYYA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0280 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Lan10g0280 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Lan10g0280 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 229 243 IPR018067 -
Lan10g0280 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Lan10g0280 512 SMART WD40_4 270 310 IPR001680 GO:0005515
Lan10g0280 512 SMART WD40_4 220 259 IPR001680 GO:0005515
Lan10g0280 512 SMART WD40_4 31 66 IPR001680 GO:0005515
Lan10g0280 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Lan10g0280 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Lan10g0280 512 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Lan10g0280 512 PIRSF PPA2_B55 11 512 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 MobiDBLite consensus disorder prediction 435 458 - -
Lan10g0280 512 MobiDBLite consensus disorder prediction 160 185 - -
Lan10g0280 512 MobiDBLite consensus disorder prediction 157 185 - -
Lan10g0280 512 Gene3D - 75 510 IPR015943 GO:0005515
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 231 258 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 259 286 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 287 315 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Lan10g0280 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0280 Lan-Chr10 1804073 1811328 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0280 K04354 - gmx:100799449 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2128 6 31764442 31772290 Lan10g0280 10 1804073 1811328 LSH
Lan10g0280 10 1804073 1811328 Lan3g0221 3 1419884 1431355 LSH
Lan10g0280 10 1804073 1811328 Lan5g0609 5 12434951 12444070 PCT
Lan10g0280 10 1804073 1811328 Lan9g0644 9 9496077 9506180 PCT
Lan5g0609 5 12434951 12444070 Lan10g0280 10 1804073 1811328 PCT
Lan9g0644 9 9496077 9506180 Lan10g0280 10 1804073 1811328 PCT