Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2028 ATGTTGCTTTCTATAACATTCCATTACTCTTCACCGTTACTTTCTCACTTTCAATTCACTTATAACTATATTCATAGTAACCGCCGTCACGAAATGGCGGCTATTCTTTTCATTTACGCGGCGGCGGTGGTGGTTTTGACGGTGGCGGTTGTTTCTGGATCTCCGGTGACTCTAACTCTGGAGAGAGCTTTTGCTTCGAATCATGGAGTGGAATTGAGTCATCTCAAAGCTCGAGATATGTTTCGGCATAGAAGAATTTTGCAATCTTCTAATGGTGGTGTTGTTAATTTCCCTGTTCAAGGAACTTCCAATCCTTTTGATGTTGGGCTCTACTTCACGAAGGTGCAGTTAGGTACTCCTCCAGTGGAATTCAATGTTCAGATTGACACTGGCAGTGATGTTCTCTGGGTTACTTGCAACCCCTGCAATGGTTGTCCACAGACAAGTGGGCTTCCGGTTAAACTCAATTTTTTTGACCCCACGAGTTCATCAACATCTTCGTTAATATCTTGTTCTGACCAAAGGTGCAACAGTGGAGTACAATCATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCTTACAACTTCCAATATGGGGATGGCAGCGGGACATCAGGCTATTATGTATCCGATTATATGCATTTTAGCACTCTTTTTGAGCGATCCATGAGTACAACCTCTTCAGCATCTGTAGTTTTTGGTTGTAGCAACCAGCAGACCGGGGACTTGACAAAGGCTGATAGAGCTGTTGATGGAATATTTGGATTTGGGCAACAAGGCATGTCTGTCATCTCCCAACTCTCATCCCAAGGAATAGCTCCAGGAGTGTTCTCCCATTGTTTGAAAGGAGGTAACAGTGGTGGGGGAATACTGGTTTTGGGTGAGATCGTGGAACCAAACATAGTTTATACGCCACTTGTTCCATCACAGCCCCATTACAATATAAATCTGCAGAGCATCTCTGTCAATGGGCAGACATTGCAAATTGATTCATCCGTTTTTGCTACATCAAACAGCAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTAGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCACAGTCTGTACGACCTGTTGCTTCCAAGGGAGTTCAATGTTACCTAATTACATCCAGTATCTCAGATGGTTTTCCTCAAGTAAGTCTTAATTTTGCTGGCGGCGCATCAATGGTTTTAGGAGCTCAGGACTACCTAATACAGCAGACTTCCATGGCATCAATGTGGTGTATGGGCTTTCAGAAAATCCAGGGTCAAGGGCTAACAATTTTAGGAGACCTTGTATTAAAGGACAAAATTATTGTTTATGATTTGGCTGGTCAACGTGTTGGATGGGCTAAATATGACTGTTCTTTATCGGTTAATGTCTCCGCAACAACGGGCACGGACAGAAGCGAATTTGTTAATGCTAGAGTGCGAAGTAGAAGCACTTCTTTGCAAGATGAACTTCACAAGTTGACAAAGATGGGGCTTTTGGCTTTCTTCCTGCACATAACACTGATTTTCTGCTCTGTTTTATAG 1575 0.433 MLLSITFHYSSPLLSHFQFTYNYIHSNRRHEMAAILFIYAAAVVVLTVAVVSGSPVTLTLERAFASNHGVELSHLKARDMFRHRRILQSSNGGVVNFPVQGTSNPFDVGLYFTKVQLGTPPVEFNVQIDTGSDVLWVTCNPCNGCPQTSGLPVKLNFFDPTSSSTSSLISCSDQRCNSGVQSSDASCSSQNNQCSYNFQYGDGSGTSGYYVSDYMHFSTLFERSMSTTSSASVVFGCSNQQTGDLTKADRAVDGIFGFGQQGMSVISQLSSQGIAPGVFSHCLKGGNSGGGILVLGEIVEPNIVYTPLVPSQPHYNINLQSISVNGQTLQIDSSVFATSNSRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSVRPVASKGVQCYLITSSISDGFPQVSLNFAGGASMVLGAQDYLIQQTSMASMWCMGFQKIQGQGLTILGDLVLKDKIIVYDLAGQRVGWAKYDCSLSVNVSATTGTDRSEFVNARVRSRSTSLQDELHKLTKMGLLAFFLHITLIFCSVL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2028 524 CDD pepsin_A_like_plant 111 468 IPR034161 -
Lan6g2028 524 ProSiteProfiles Peptidase family A1 domain profile. 111 464 IPR033121 -
Lan6g2028 524 SUPERFAMILY Acid proteases 105 471 IPR021109 -
Lan6g2028 524 Gene3D Acid Proteases 298 475 IPR021109 -
Lan6g2028 524 PRINTS Pepsin (A1) aspartic protease family signature 117 137 IPR001461 GO:0004190|GO:0006508
Lan6g2028 524 PRINTS Pepsin (A1) aspartic protease family signature 344 355 IPR001461 GO:0004190|GO:0006508
Lan6g2028 524 PRINTS Pepsin (A1) aspartic protease family signature 440 455 IPR001461 GO:0004190|GO:0006508
Lan6g2028 524 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 35 485 - -
Lan6g2028 524 Pfam Xylanase inhibitor C-terminal 314 464 IPR032799 -
Lan6g2028 524 Pfam Xylanase inhibitor N-terminal 111 296 IPR032861 -
Lan6g2028 524 Gene3D Acid Proteases 86 297 IPR021109 -
Lan6g2028 524 PANTHER ASPARTYL PROTEASES 35 485 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2028 Lan-Chr6 31015252 31020437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2028 84 469 Miscellaneous Gene Families AT1G44130 27.228 6.92e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2028 - K00924 lang:109351129 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2028 6 31015252 31020437 Lan3g0104 3 730387 735516 LSH
Lan6g2028 6 31015252 31020437 Lan7g0338 7 2310166 2314657 PCT
Lan7g0338 7 2310166 2314657 Lan6g2028 6 31015252 31020437 PCT