Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0104 ATGGCGCGTGTTTTTCTAATATACGCCGTGGCGGTGCTCACGGTGGCGGTGGTGGTTGTTTCTGGATCTCCGGCGACTATGACGCTGGAAAGAGCTTTTCCTTCAAATGATGGAGTTGAATTGAGTCACCTAAGAGCTCGTGATATGTTCAGGCATCGAAGAATGTTGAAGTCTTCAAACGTTAGCGTTGTTGATTTCTCTGTTCAAGGAACATTCAATCCCTACGAAGTTGGGCTTTATTTTACAAAGGTGCTGTTAGGTACTCCTCCTGTGGAATTCTATGTGCAGATTGACACCGGAAGTGATGTTCTCTGGGTTAGTTGCAACTCCTGCAATGGTTGTCCCCAGACAAGTGGGCTTAAGATTCAGCTCAATTTTTTTGACCCCCGAAGTTCATCAACATCTTCAGTAATATCTTGTTCAGACCAAAAGTGCTATAGTGGAGTACAATCATCAGATGCCAGCTGTTCCAGTGATAACAGCCAATGCTCTTACAATTTCCAGTATGGAGATGGTAGTGGGACATCAGGTTATTACGTATCCGACTATATGCATTTTAATACTCTCTTTGACGGATCTGTGTCTACGAATTCTTCAGCTGTAGTTTTTGGTTGTAGCAATCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCTGTTGATGGAATATTTGGGTTTGGGCAACAGGACATGTCTGTCATCTCCCAACTCTCCTCAAAAGGGATAGCTCCAAGGGTGTTCTCCCATTGTTTGAAAGGAAATAACAGTGGTGGAGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCACAGCCCCATTACAATATAAATCTGCAGAGCATCTCTGTCAATGGCAAGACATTGCAAATTGATTCATCAGTTTTTGCTACGTCAAACAACAGAGGTACCATTATTGATTCAGGAACAACTTTGGCGTACCTCGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCAGAATCTGTAAGCACTGTTGCTTCCCAGGGAAATCAGTGTTACCTAACCACATCCAGTGTCAATAATGTTTTTCCTCAAGTAAATCTGCATTTTGATGGAGGTGCATCAATGGTTTTAGGACCACGAGACTACCTCATACAGCAGAGTTCCACGGCACCAATTTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGAGTAACGATTTTAGGAGACCTTGTATTGAAGGACAAAATTTTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTACGATTGTTCTTTGCCTGTTAATGTCTCTGCAACAACCGGCACTGGCAGAAGTGAATCTGTTAATGCCGGAGATCTAAGCGGAAGCACTTCTTTACATGATGGACTTCACAAGTTGACAAAAATGGGGCTTTTGGCTTTCTTCTTGCACATAACACTGATTTGCTGCTGTGTTTTTATACCATAA 1485 0.4296 MARVFLIYAVAVLTVAVVVVSGSPATMTLERAFPSNDGVELSHLRARDMFRHRRMLKSSNVSVVDFSVQGTFNPYEVGLYFTKVLLGTPPVEFYVQIDTGSDVLWVSCNSCNGCPQTSGLKIQLNFFDPRSSSTSSVISCSDQKCYSGVQSSDASCSSDNSQCSYNFQYGDGSGTSGYYVSDYMHFNTLFDGSVSTNSSAVVFGCSNQQTGDLTKSDRAVDGIFGFGQQDMSVISQLSSKGIAPRVFSHCLKGNNSGGGILVLGEIVEPNIVYTPLVPSQPHYNINLQSISVNGKTLQIDSSVFATSNNRGTIIDSGTTLAYLAEEAYDPFVNAITAAIPESVSTVASQGNQCYLTTSSVNNVFPQVNLHFDGGASMVLGPRDYLIQQSSTAPIWCIGFQKIQGQGVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSATTGTGRSESVNAGDLSGSTSLHDGLHKLTKMGLLAFFLHITLICCCVFIP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0104 494 Pfam Xylanase inhibitor N-terminal 80 264 IPR032861 -
Lan3g0104 494 ProSiteProfiles Peptidase family A1 domain profile. 80 432 IPR033121 -
Lan3g0104 494 CDD pepsin_A_like_plant 80 436 IPR034161 -
Lan3g0104 494 Gene3D Acid Proteases 55 265 IPR021109 -
Lan3g0104 494 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Lan3g0104 494 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Lan3g0104 494 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Lan3g0104 494 PANTHER ASPARTYL PROTEASES 8 453 IPR001461 GO:0004190|GO:0006508
Lan3g0104 494 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 453 - -
Lan3g0104 494 SUPERFAMILY Acid proteases 73 438 IPR021109 -
Lan3g0104 494 Pfam Xylanase inhibitor C-terminal 282 432 IPR032799 -
Lan3g0104 494 Gene3D Acid Proteases 266 441 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0104 Lan-Chr3 730387 735516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0104 53 437 Miscellaneous Gene Families AT1G44130 28.040 6.98e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0104 - K00924 lang:109351129 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2028 6 31015252 31020437 Lan3g0104 3 730387 735516 LSH
Lan3g0104 3 730387 735516 Lan7g0338 7 2310166 2314657 PCT
Lan7g0338 7 2310166 2314657 Lan3g0104 3 730387 735516 PCT