Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0948 ATGGGCTGTTTCACCTCTAAGGTTAAGATACAGTTTCCTGGCCAGGAAGATCCAGTAATTCTTGCTTCGCAGACAGCATTCACTGTCAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGTAGCTCTGTCATAGATGATGGGCTAATAAGCAAGGAAGAACTTCAATTGGCCATTTTCAAAAATAGGAAAAAGGAGAATATCTTCGCAAACAGGATCTTTGATCTATTTGACGTTAAGAAGAAGGGAGTCATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCACCACTTGAAGACAAGATAGATTTTTCATTTAAGCTCTATGATTTGGACAATACAGGATTTATAGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCGCTTCTATTTGAATCTGAAATGAAGTTGGCAGATGAGGTGATAGAAACAATTATTGACAAGACTTTCATGGATGCTGACCTGAACCAAGATGGGAAAATAGACATTATGGAGTGGCAAAATTTTGTATCCAAAAACCCATCACTGCTTAAAATCATGACCCTACCCTACCTGAGGGACATAACAACCTCTTTCCCAAGTTTTGTATTCAACTCAAATGTGGATGAAGTTGCTACATAA 642 0.3847 MGCFTSKVKIQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVIDDGLISKEELQLAIFKNRKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLFESEMKLADEVIETIIDKTFMDADLNQDGKIDIMEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEVAT* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0948 213 Gene3D - 18 211 - -
Lan6g0948 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lan6g0948 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lan6g0948 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lan6g0948 213 PRINTS Recoverin family signature 75 96 - -
Lan6g0948 213 PRINTS Recoverin family signature 122 140 - -
Lan6g0948 213 PRINTS Recoverin family signature 168 188 - -
Lan6g0948 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Lan6g0948 213 CDD EFh 108 178 IPR002048 GO:0005509
Lan6g0948 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Lan6g0948 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Lan6g0948 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lan6g0948 213 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lan6g0948 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lan6g0948 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lan6g0948 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lan6g0948 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0948 Lan-Chr6 8883620 8887886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0948 1 213 EF-hand Containing Proteins AT4G17615 81.221 7.28e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0948 K06268 - cit:102622664 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0948 6 8883620 8887886 Lan18g0376 18 7040336 7044450 LSH
Lan6g0948 6 8883620 8887886 Lan17g0972 17 13729173 13733983 LSH
Lan17g0396 17 2943647 2947482 Lan6g0948 6 8883620 8887886 PCT
Lan18g0376 18 7040336 7044450 Lan6g0948 6 8883620 8887886 PCT
Lan6g0948 6 8883620 8887886 Lan17g0396 17 2943647 2947482 PCT
Lan6g0948 6 8883620 8887886 Lan18g0376 18 7040336 7044450 PCT