Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0972 ATGGGTTGTTTCCACTCTAAGGGTAAAAGACAGTATCCTGGCCATGAAGATCCAGTAGTTCTTGCATCGCAGACAGCTTTCACTGTCAGCGAGGTTGAAGCACTATTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTCACAGATGATGGGCTAATAAGCAAGGAAGAATTCCAATTGGCAATTTTCCAAAATAGAAAAAAGGAGAACATCTTCACAAACCGGATCTTTGATCTATTTGATGTTAAGAAGAAGGGGGTTGTTGATTTTGACGACTTTGTTAGGTCTCTCAATGTCTTCCACCCAAATGCGCGACTTGAAGACAAGGTAGATTTTTCATTTAAGCTCTATGATTTATGCAATACAGGATTTATAGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCGCTTCTATGTGAAACTGAAATGAAGTTGGCAGATGAGATGATAGAAACAATTCTTGACAAGACTTTTGTGGATGCTGACCTGAACCAAGATGGGAAAATAGACATTGTGGAGTGGCAAAACTTTGTTTCTAAAAATCCTTCGATACTTAAAATCATGACTCTACCCTACCTGAGGGATTTAACAACTTGTTTCCCAAGTTTTGTATTTAACTCTAATGTGGATGAAGTTTCTGCTTGA 642 0.3863 MGCFHSKGKRQYPGHEDPVVLASQTAFTVSEVEALFELFKSISSSVTDDGLISKEEFQLAIFQNRKKENIFTNRIFDLFDVKKKGVVDFDDFVRSLNVFHPNARLEDKVDFSFKLYDLCNTGFIERQEVKQMLIALLCETEMKLADEMIETILDKTFVDADLNQDGKIDIVEWQNFVSKNPSILKIMTLPYLRDLTTCFPSFVFNSNVDEVSA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0972 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lan17g0972 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 212 - -
Lan17g0972 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lan17g0972 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lan17g0972 213 Pfam EF hand 153 177 IPR002048 GO:0005509
Lan17g0972 213 PRINTS Recoverin family signature 75 96 - -
Lan17g0972 213 PRINTS Recoverin family signature 122 140 - -
Lan17g0972 213 PRINTS Recoverin family signature 168 188 - -
Lan17g0972 213 CDD EFh 108 178 IPR002048 GO:0005509
Lan17g0972 213 Gene3D - 17 211 - -
Lan17g0972 213 SUPERFAMILY EF-hand 21 201 IPR011992 -
Lan17g0972 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lan17g0972 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lan17g0972 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lan17g0972 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lan17g0972 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0972 Lan-Chr17 13729173 13733983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0972 1 213 EF-hand Containing Proteins AT4G17615 78.404 8.58e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0972 K06268 - cit:102622664 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0948 6 8883620 8887886 Lan17g0972 17 13729173 13733983 LSH
Lan18g0376 18 7040336 7044450 Lan17g0972 17 13729173 13733983 LSH
Lan17g0396 17 2943647 2947482 Lan17g0972 17 13729173 13733983 PCT
Lan18g0376 18 7040336 7044450 Lan17g0972 17 13729173 13733983 PCT
Lan17g0972 17 13729173 13733983 Lan17g0396 17 2943647 2947482 PCT
Lan17g0972 17 13729173 13733983 Lan18g0376 18 7040336 7044450 PCT