Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0396 ATGGGCTGTTTTAACTCTAAAGTAGCAGGACAATACTTTCCAGGGCAGGAAGACCCTGCAATCCTTGCATCACAGACTGTTTTCACCTTCAGTGAGGTGGAAGCACTGTTTGAACTTTTTAAGAGCATCAGCGGCTCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCAAGAGTAGGAAAGAAGAGAATCTTTTTGCAAATCGGATCTTTGATCTATTTGATGTCAAAAGCAAAGGAGTCATTGACTTTGGTGACTTTGTTAGAGCACTCAGTGTCTTCCACCCAAATGCACAACAACAAGTCAAGATAGATTTTTCTTTTAGGCTCTATGATTTGGACGGTACAGGCTTTATAGAGCGCCACGAGGTCAAGCAAATGATAATTGCACTTCTTTGTGAGTCTGAAATAAAGTTGACAGATGAGATGATAGAAACGATTATTAACAAGACTTTCTTGGCTGCTGACCCAAACCAAGATGGGAAAATAGACAAGTCCGAATGGCAAGACTTCGTTTCTGAAAACCCATCACTTCTAAAAATCATGACACTACCCTACCTAAGAGACATAACAACTTCTTTCCCAAGTTTTGTATTTAACTCCAAGGTGGACGATGCGGTTAACGCTTGA 648 0.3997 MGCFNSKVAGQYFPGQEDPAILASQTVFTFSEVEALFELFKSISGSVIDDGLISKEEFQLAIFKSRKEENLFANRIFDLFDVKSKGVIDFGDFVRALSVFHPNAQQQVKIDFSFRLYDLDGTGFIERHEVKQMIIALLCESEIKLTDEMIETIINKTFLAADPNQDGKIDKSEWQDFVSENPSLLKIMTLPYLRDITTSFPSFVFNSKVDDAVNA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0396 215 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Lan17g0396 215 CDD EFh 109 179 IPR002048 GO:0005509
Lan17g0396 215 SUPERFAMILY EF-hand 20 203 IPR011992 -
Lan17g0396 215 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Lan17g0396 215 Gene3D - 18 212 - -
Lan17g0396 215 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Lan17g0396 215 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lan17g0396 215 Pfam EF-hand domain pair 109 178 IPR002048 GO:0005509
Lan17g0396 215 SMART efh_1 109 137 IPR002048 GO:0005509
Lan17g0396 215 SMART efh_1 153 181 IPR002048 GO:0005509
Lan17g0396 215 SMART efh_1 72 100 IPR002048 GO:0005509
Lan17g0396 215 PANTHER CALCINEURIN B-LIKE MOLECULE 1 212 - -
Lan17g0396 215 PRINTS Recoverin family signature 76 97 - -
Lan17g0396 215 PRINTS Recoverin family signature 123 141 - -
Lan17g0396 215 PRINTS Recoverin family signature 169 189 - -
Lan17g0396 215 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Lan17g0396 215 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0396 Lan-Chr17 2943647 2947482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0396 1 211 EF-hand Containing Proteins AT4G17615 76.303 1.72e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0396 K06268 - ming:122072685 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0396 17 2943647 2947482 Lan18g0376 18 7040336 7044450 LSH
Lan17g0396 17 2943647 2947482 Lan6g0948 6 8883620 8887886 PCT
Lan17g0396 17 2943647 2947482 Lan18g0376 18 7040336 7044450 PCT
Lan17g0396 17 2943647 2947482 Lan17g0972 17 13729173 13733983 PCT
Lan6g0948 6 8883620 8887886 Lan17g0396 17 2943647 2947482 PCT
Lan18g0376 18 7040336 7044450 Lan17g0396 17 2943647 2947482 PCT
Lan17g0972 17 13729173 13733983 Lan17g0396 17 2943647 2947482 PCT