Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0314 ATGGACTCACAGCAGAGCAATCTATTCGACACGGCTTCGCAGCCCGACACAGGCAACGATGTCTACACTTTCCTTGAATTCAACACTCAGGGCGAGGATTTCGACTACCCGGAGTTCCACGACTCGACTAGGTCACCGGTTTCCTGGCCCACACCATCCGGTTCGCTTGCTGAACCCTCTGAGCGCGGAGGTGGAGGTGTCGGAGCTGTGTCCGATCACCAGTCTGATGGCTCACCTGTTTCGGCAGCTCCGGGAAGTGCGACGAAGGGGCGGTCAGGAAGCGGAGGGAATAGTCAGATGGTGGATGCGCTGGTGTTGGGGATAAGCGGGTTGAATTTTGAGGATACCGGTGATGACGATAATTTTGATTATGGTAAGGGAGATTTCACTGAACATGCTTGCAAGTATTGTGGTATCTCCAATCCAGCATGTGTTGTGAGGTGCAATGTGCCTTCATGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCTGGATCGCATATCGTGAATCACCTGGTTCGGGCAAAACACAAGGAAGTCTGTCTGCACAAAGATAGTCCTCTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTGGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGCTTGAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGCCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTCGTCAAGGTCCCATCTGAACAAGAGCAGTTAAGGGCACGCCACATAAGTGCGCAACAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAACCCGTGGCACTGAAATACGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATATCACAATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGATAACGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCACATCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACGGCACAAGAAGAAATTGCACTGGAGCTTCGTGCTAGTCAGGGGGTACCAGTTGATGTAAACCATGGTTTTAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGTGCTATGAAAACCTTTGCCGTGGATGAGACAAGTGTAAGCGGGTATATTTATCATCATTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAACACATTGCCGCGTCGCTTTGGTGCACCTGGGCTTCCAGAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCAAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAGCTGGCTGAAAAGATAAGTGCTACTGGGTTGAAGGTTGTGAGGCTCTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTGACACTTCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAGCTTCACAAGTTACAAATGCTTAAAGATGAACAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATATAAAGCACTTAAACGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGTTGGTGCTGGAGATCCCCGGCTATCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCATTCCTTTGGTTCTTGGGGCAAAGCAGGCTGTTCTTGTGGGTGACCATTGTCAGCTTGGTCCAGTCATCATGTGCAAGAAAGCAGCTCGTGCTGGGCTAGCTCAGTCACTTTTTGAACGTCTTGTTCTACTTGGCGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGTCTTTCAGAATTTCCCTCAAACAGCTTTTATGAAGGCACCTTGCAAAATGGAGTCACTGTTAATGAAAGGCAATCATCAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGCGTGGTCCCGAGTCAGATCGGCGTGATAACACCGTATGAGGGGCAAAGAGCTTATATTGTGAACCATATGTCAAGGAATGGTTCTCTCAGACAGCAACTTTATAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACATCAGGGCATTGGGTTTCTCAATGATCCGAGGAGGCTCAATGTTGCTTTGACACGAGCAAGATATGGTATCGTTGTTCTGGGAAACCCTAAAGTTCTAAGCAAGCAGCCCCTGTGGAATGGCTTATTGACACACTACAAGGAATATGAATGCTTAGTCGAAGGGCCTTTGAACAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAGCCCAAGAAGATTTACAATGAAAGGAGGCTTTTTTACGGGGGAGGACCTGGAGTTGCAACTAATGACAATTTTGGTTCTGGTGCAACTTTAGATCGAAGGACTGGCCGAGGAAGAGGATCTTATATGCCTCCTGGCCCACCAAATGGTACTCATAAGCCTGGCTTGCATCCTGCTGAGTATACAATGCCTAGAGTTCCCTTGCATCCTTTTCACGGTGGTCCCCAATCTCAACCATATGCAATCCCATCTCGTGGAGCTGTGCATGGACCTGTTGGGGCAGTTCCTCATGTATCATCTCCAGGGACTCGGGGTTTTGGGGCTGGGAGAGGTAATACTGGTGCTGCAATCGGAAATCATCTTCCACACCAGCAAGGTACACATCAATCTGTTGGGAATATTGGACCCACATTTAACTTCCCTGGTCTGGAGAATCCCAACAGCCAGCCATCTGTTGGTGGCCCATTATCTCAACCTGGCTTTAACAATATGCCAGCCCAAGGGGCGAGCCAGTCATTTCGGGATCAGTTTTCTGTGCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTTAAAAGCCAGGGCTCTCACGTTCCTTATAATGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGCATATACTGTTGATTACGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTCCTGAACCAGAATTCTCAAGCTGGGTATTCACGTTTTGGTTCTGGAAATGACTTCATGTCTCAGGTTGCTGAGGACTACATGGCCCATGGATCACCAGATCTTTTCACTCAGGCTGGATTCAGTGATCACTTGCAAGATGATGCAACACAAAGCCATTTCAGTGTGGCCAATCCCAATGCTCTTCAGTCTCAGATGAATTCTCTCTATTCCCAGCCTTTTGCTCACTACAACACACAATCGCTGAACTTGCAGGCTTCCCAACAGCAGTCTCAGGGTCAGGGCTCCCAAAATCAGAAAATTCACTATAATGGTTAA 3792 0.4581 MDSQQSNLFDTASQPDTGNDVYTFLEFNTQGEDFDYPEFHDSTRSPVSWPTPSGSLAEPSERGGGGVGAVSDHQSDGSPVSAAPGSATKGRSGSGGNSQMVDALVLGISGLNFEDTGDDDNFDYGKGDFTEHACKYCGISNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARHISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEIALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNHMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVVLGNPKVLSKQPLWNGLLTHYKEYECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVATNDNFGSGATLDRRTGRGRGSYMPPGPPNGTHKPGLHPAEYTMPRVPLHPFHGGPQSQPYAIPSRGAVHGPVGAVPHVSSPGTRGFGAGRGNTGAAIGNHLPHQQGTHQSVGNIGPTFNFPGLENPNSQPSVGGPLSQPGFNNMPAQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSAYTVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQVAEDYMAHGSPDLFTQAGFSDHLQDDATQSHFSVANPNALQSQMNSLYSQPFAHYNTQSLNLQASQQQSQGQGSQNQKIHYNG* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0314 1263 Gene3D - 446 716 IPR027417 -
Lan6g0314 1263 Pfam Type III restriction enzyme, res subunit 488 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lan6g0314 1263 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lan6g0314 1263 Gene3D - 717 928 IPR027417 -
Lan6g0314 1263 CDD 1B_UPF1-like 338 425 IPR040812 -
Lan6g0314 1263 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1029 IPR045055 -
Lan6g0314 1263 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1029 - -
Lan6g0314 1263 MobiDBLite consensus disorder prediction 74 96 - -
Lan6g0314 1263 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Lan6g0314 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Lan6g0314 1263 Pfam AAA domain 589 685 IPR041677 GO:0004386
Lan6g0314 1263 Gene3D - 338 426 - -
Lan6g0314 1263 CDD DEXXQc_UPF1 482 717 - -
Lan6g0314 1263 MobiDBLite consensus disorder prediction 1243 1263 - -
Lan6g0314 1263 CDD SF1_C_Upf1 718 907 IPR041679 -
Lan6g0314 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 941 IPR027417 -
Lan6g0314 1263 MobiDBLite consensus disorder prediction 1072 1101 - -
Lan6g0314 1263 MobiDBLite consensus disorder prediction 1 26 - -
Lan6g0314 1263 MobiDBLite consensus disorder prediction 1 96 - -
Lan6g0314 1263 Pfam AAA domain 695 890 IPR041679 -
Lan6g0314 1263 Gene3D - 568 620 - -
Lan6g0314 1263 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0314 Lan-Chr6 2407389 2420434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0314 K14326 - gmx:100795594 2372.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0384 17 2857486 2874803 Lan6g0314 6 2407389 2420434 LSH
Lan18g0934 18 14605023 14622097 Lan6g0314 6 2407389 2420434 LSH