Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0934 ATGGACTCACAACAGAGCAATTTATTCGACACCGCTTCGCAACCCGACACAGGCAACGACGATTACACTTTCCTCGAATTCAACACTCAGGGCGAGGATTTCGACTACCCGGAGTTCCGTGACCCGATTAGGTCACCGGTGTCATGGCCCACGCCCTCTGGTTCGCTGGCTGAACCCTCTGAGCGTGGTGGCGGAGCTGGGTCTGATCACCACTCTGATGCTTCTCCTGTTTCTACAACTCCGGGGAGCGCGACGAAGGGGCGTTCTGGAAGCAGTGGCGGAGGAGGGAATAGCCAGATGGTGGATGCGCTGGTGCCGGGGATGAGCGGGTTGAATTTTGAGGACACTGGTGATGATGATAATTTTGAGTATGGTAAGGGAGATTTCACTGAACATGCTTGCAGGTATTGTGGTGTCTCAAATCCAGCGTGTGTTGTGAGGTGCAATGTGCCGTCGTGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCTGGATCGCATATTGTAAATCACCTGGTTCGGGCAAAACATAAAGAAGTCTGTCTACACAAAGATAGTCCATTGGGAGAAACAATTCTTGAATGTTACAACTGTGGCTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAGCCTTGCTTGAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGACGATAGGTGTTTCTTGCAGTGGCTCGTCAAGGTCCCATCCGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAGGAGTTGTGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCTTTGAAATATGAAGATGCTTATCAGTATCAAAATGTATTCGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAACGTTACAATTCGATGGGATATCGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGATAATGAGTTGCGTCTTGTACCTGGAGATGAATTACGATTACGTTATTCTGGTGATGCTGCACATCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAGGAAGAAGTAGCACTGGAGCTTCGGGCTAGTCAGGGGGTGCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACAAGCTTTGATAGGATGCAGGGTGCGATGAAAAACTTTGCTGTGGATGAGACTAGTGTAAGCGGGTATATTTATCATCATTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAACACATTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGACCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGGAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGACAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAGCTGGCTGAAAAGATAAGCGCTACTGGATTGAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACACTTCACTATCAGGTCCGACATCTTGACACATCTGACAAGAGTGAACTTCACAAGTTACAGATGCTTAAAGATGAGCAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGTTGGTGCTGGAGATCCTAGGCTGGCAAATTTTAGGTTCCGTCAGGTGCTTATTGATGAGTCTACTCAAGCAACAGAACCTGAGTGTCTCATTCCTTTGGTTCTTGGGGTGAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTCATTATGTGTAAGAAAGCAGCTCGTGCTGGACTAGCTCAGTCACTCTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAATATCGCATGCATCCATGCCTTTCAGAATTTCCTTCAAACAGCTTTTATGAAGGGACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATCATCAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTATTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATATAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGTGTGGTCCCAAGCCAGATTGGTGTAATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACCATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTATAAGGAGATTGAGGTTGCCAGTGTTGATTCTTTTCAGGGGAGGGAGAAGGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACACCAGGGCATCGGATTTCTGAATGATCCGAGGAGGCTCAATGTTGCTTTGACTCGAGCAAGATATGGTATCGTTATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAACCCCTGTGGAATGGCTTATTGACACACTATAAGGAACATGAATGCTTAGTAGAAGGGCCTTTGAACAATTTGAAGCAGAGTATGGTTCAATTCCAGAAACCCAAGAAAATTTACAATGAACGGCGGCTTTTTTATGGGGGTGGACCTGGAATTGCAGCTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAGGACTGGCCGTGGAAGAGGGTCTTATATGCCTCCTGGCCCAGCAAATGGAACCCATAAGCCTGGCGTGCATTCTGCTGGCTATACTCTGCCTAAAGCTCCCTTGCATCCTTTTCATGGGGGTCCCCAATCTCAACCATATGCAATTCCATCTCGTAGAGCTGTACATGGACCCGTTGGGGCAGTTCCTCATGTACCGTCTCCAGGGAGTCGGGGTTTTGGGGCTGGGAGAGGTAATACTGGTGCCCCAATTGGCAATCATCTTCCACACCAGCAAAGTACACAGCAATCTGTTGGGAGTATCGGATCCACGTTTAACTTCCCGGCTCTGGAAAATCCTAATAGCCAGCCATCTGTTGGTGGCCCATTATCTCAACCTGAGTTTGCTAATAATATGCCAGTCCAAGGGGCGAGCCAATCATTTCGAGATCAGTTTTCTGTGCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCTTGTTCCGTATAACGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGCATATGCTGTTGATTATGCTACACAAGTAGCACAAGGTGGATTCCCAGGGAACTTTTTGAACCAGAATTCTCAAGCTGGGTATCTGCGTTTTGGTTCTGGAAATGATTTCATGTCCCAGGACTACATGGCTCATGGATCTCCAGGTCTATTCACTCAGGCTGGATTCGCCGATCCCTTGCAAGATGATGCAACACAGGGGCATTTCAATGTGTCCAATCCCAATGTTCTTCAGTCCCAGATGAATTCTCTATATTCGCAGCCTTTTGCTCACTACAACACACAGCCGCTGAACTTGCAGGCTTCCCAACAGCAGCCTCAGGGTCAGAGCTCCCAAAATCAGAAAACTCACTATAATGGTTAA 3786 0.4567 MDSQQSNLFDTASQPDTGNDDYTFLEFNTQGEDFDYPEFRDPIRSPVSWPTPSGSLAEPSERGGGAGSDHHSDASPVSTTPGSATKGRSGSSGGGGNSQMVDALVPGMSGLNFEDTGDDDNFEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMLFYVQMGQEEISASGTSYINRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNHMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSGATSDRRTGRGRGSYMPPGPANGTHKPGVHSAGYTLPKAPLHPFHGGPQSQPYAIPSRRAVHGPVGAVPHVPSPGSRGFGAGRGNTGAPIGNHLPHQQSTQQSVGSIGSTFNFPALENPNSQPSVGGPLSQPEFANNMPVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSLVPYNVADFSTQASQSAYAVDYATQVAQGGFPGNFLNQNSQAGYLRFGSGNDFMSQDYMAHGSPGLFTQAGFADPLQDDATQGHFNVSNPNVLQSQMNSLYSQPFAHYNTQPLNLQASQQQPQGQSSQNQKTHYNG* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0934 1261 MobiDBLite consensus disorder prediction 1241 1261 - -
Lan18g0934 1261 MobiDBLite consensus disorder prediction 72 98 - -
Lan18g0934 1261 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lan18g0934 1261 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1029 IPR045055 -
Lan18g0934 1261 CDD 1B_UPF1-like 338 425 IPR040812 -
Lan18g0934 1261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Lan18g0934 1261 Gene3D - 446 716 IPR027417 -
Lan18g0934 1261 CDD DEXXQc_UPF1 482 717 - -
Lan18g0934 1261 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lan18g0934 1261 Pfam AAA domain 589 685 IPR041677 GO:0004386
Lan18g0934 1261 Pfam AAA domain 695 890 IPR041679 -
Lan18g0934 1261 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Lan18g0934 1261 CDD SF1_C_Upf1 718 907 IPR041679 -
Lan18g0934 1261 Pfam Type III restriction enzyme, res subunit 488 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lan18g0934 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 941 IPR027417 -
Lan18g0934 1261 MobiDBLite consensus disorder prediction 1 26 - -
Lan18g0934 1261 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1029 - -
Lan18g0934 1261 Gene3D - 717 928 IPR027417 -
Lan18g0934 1261 Gene3D - 338 426 - -
Lan18g0934 1261 Gene3D - 568 620 - -
Lan18g0934 1261 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0934 Lan-Chr18 14605023 14622097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0934 K14326 - gmx:100795594 2368.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0934 18 14605023 14622097 Lan18g0934 18 14605023 14622097 ECH
Lan17g0384 17 2857486 2874803 Lan18g0934 18 14605023 14622097 LSH
Lan18g0934 18 14605023 14622097 Lan6g0314 6 2407389 2420434 LSH