Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0384 ATGGATTCACAACAGAGCAATCTTTTCGACACCGTTTCGCAACCCGACCCAGGAAACGACGCTTACGCTTTCCTCGAATTCAACACCCAGGGCGAGGATTTCGATTATCCGGAGTTCTGCGACCCGATTAGGTCACCGGTGTCATGGCCTACGCCCTCCGATTCGCTTGCTGAACCCTCGGAGCGCGGCGGTGGAGGTGGCGGAGCTGGGTCCGATCACCAGTCTGATGCCTCGCCGGTTTCAGCTGCTCCAGGGAGTGCGGCGAAAGGGCGGTCCGGAAGCAGCAGCGGGGGAGGAAATAGCCAGATGGTGGATGCGCTGCTGCCTGGGATGAGCGGGTTGAATTTTGAGGACACTGGTGATGACGATAATTTCGAGTATGGCAAGGGTGATTTTACTGAACATGCTTGCAAATATTGTGGCGTCTCCAATCCAGCGTGTGTTGTGAGGTGCAACGTGCCTTCGTGTCGCAAGTGGTTCTGTAATTCTCGTGGGAACACTTCTGGATCACATATAGTAAATCACCTGGTTCGGGCAAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGCTTGAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGCCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTAAAGGTCCCATCTGAACAAGAGCAGTTGAGGGCACGCCAAATAAGTGCTCAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCCGTGGCTTTGAAATACGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATATCACAATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCGTACTTTGTTTTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGCTATTCGGGTGATGCTGCACATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAAGAAGTTGCACTGGAGCTCCGTGCTAGTCAGGGGGTGCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGTGCTATGAAAACCTTTGCTGTAGATGAGACGAGTGTAAGCGGGTATATTTATCATCATTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAACGCATTGCCTCGCCGCTTTGGTGCACCTGGGCTTCCAGAACTCAATGCATCTCAAGTTTTTGCTGTGAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTGTATCACATGGCCAAGCAAGGTCAAGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAACTGGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTGAGGCTCTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACCCTTCACTATCAGGTTCGACATCTTGATACATCTGACAAGAGTGAACTTCACAAGTTACAAATGCTTAAAGATGAACAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATATAAAGCACTTAAGCGAGCAACTGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACTTGTGTTGGTGCTGGAGATCCTCGGCTATCAAACTTTAGGTTCCGTCAGGTACTTATCGATGAGTCCACTCAAGCAACAGAGCCTGAATGTCTCATTCCTTTGGTTCTTGGAGTGAAGCAGGTTGTTCTTGTGGGTGATCATTGTCAGCTTGGGCCAGTCATTATGTGCAAGAAAGCAGCTCGGGCTGGGCTAGCTCAGTCACTTTTTGAACGCCTTGTTATACTTGGCGTCAAGCCAATTAGGTTGCAGGTCCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCTAACAGCTTTTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAGACAACAGGAATTGATTTTCCATGGCCTGTGCCGAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTTACCACTTTCTTAAAAAGTGGTGTGGTCCCAAGTCAGATCGGTGTTATAACACCGTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGATCTCTCAGACAACAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGACTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACATCAGGGCATTGGATTTCTGAATGATCCGAGAAGACTTAATGTTGCTTTGACTCGAGCAAGATATGGTATTGTAATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAGCCCCTTTGGAATGGCTTATTAACACACTACAAGGAGCATGAATGCTTAGTAGAAGGGCCTTTGAACAATTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAAAGAAGGCTTTTCTATGGGGGTGGACCTGGAGTTGCAGCTAGTGACAATTTTGGTTCTGGTGCTGGTGCAACTTCAGATCGAAGGTCCGGCCGAGGAAGAGGATCTTATATGCCTCATGGACCACCAAATGGAACCCATAAGCCTGGTGTGCATCCTGCCGGGTATACTCTGCCTAGAGTCCCCTTGCATCCTTTTCATGGTGGCCCCCAATCTCAACCATATGCAATTCCATCTCGTGGAGCTGTACATGGACCTGTTGGGGCGGTTCCTCATGTACCATCTCCAGGGAGTCGGGGTTTTGGGGCTGGGAGAGGTAATACTGGTGCTCCAATTGGCAATCATCTTCCGCACCAGCAAGGTACACCGCAATCTGTTGGGAATATTGGACCCACTTTTAACTTCCCTACTCTGGAGAATCCTAACAGCCAGTCCTCTGTTGGTGGTCCATTATCTCAACCTGGGTTTGCTAATAATATGTCAGTCCAAGGGGCGAGCCAGTCATTTCGTGATCAGTTTTCAGTACCTGGAATGTCTCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAACGTTGCTGATTTCTCGACACAGGCTTCTCAATCTGTATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCGGGGAACTTCCTGAACCAGAATTCTCAAGCTGGGTATTCACGTTTTGGTTCTGGAAATGACTTCATGTCTCAGGACTACATGGCCCATGGATCACCAGGTCTTTTTACTCAGGCTGGATTCACTGATCCCTTGCAAGATGACGCATCACAAAGCCATTTCAGTGCAGCCAATCCCAATGCTCTTCAGTCCCAGATGAATCCTCTCTATTCACAGCCTTTTGCTCACTACAACACACAGCCGTTGAACTTACAGGCTTCTCAGCAGCAGTCTCAGGGTCAGAGCTCCCAAAATCAGAAAATTCACTATAAAAGTTAA 3801 0.4594 MDSQQSNLFDTVSQPDPGNDAYAFLEFNTQGEDFDYPEFCDPIRSPVSWPTPSDSLAEPSERGGGGGGAGSDHQSDASPVSAAPGSAAKGRSGSSSGGGNSQMVDALLPGMSGLNFEDTGDDDNFEYGKGDFTEHACKYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAASDNFGSGAGATSDRRSGRGRGSYMPHGPPNGTHKPGVHPAGYTLPRVPLHPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNTGAPIGNHLPHQQGTPQSVGNIGPTFNFPTLENPNSQSSVGGPLSQPGFANNMSVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSVYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSPGLFTQAGFTDPLQDDASQSHFSAANPNALQSQMNPLYSQPFAHYNTQPLNLQASQQQSQGQSSQNQKIHYKS* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0384 1266 MobiDBLite consensus disorder prediction 1051 1105 - -
Lan17g0384 1266 MobiDBLite consensus disorder prediction 1 104 - -
Lan17g0384 1266 CDD DEXXQc_UPF1 485 720 - -
Lan17g0384 1266 MobiDBLite consensus disorder prediction 1031 1105 - -
Lan17g0384 1266 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 111 1015 - -
Lan17g0384 1266 Gene3D - 341 429 - -
Lan17g0384 1266 PANTHER DNA2/NAM7 HELICASE FAMILY 111 1015 IPR045055 -
Lan17g0384 1266 Pfam RNA helicase (UPF2 interacting domain) 135 288 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lan17g0384 1266 Gene3D - 720 931 IPR027417 -
Lan17g0384 1266 Pfam Type III restriction enzyme, res subunit 491 553 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lan17g0384 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 626 IPR014001 -
Lan17g0384 1266 CDD 1B_UPF1-like 341 428 IPR040812 -
Lan17g0384 1266 Pfam RNA helicase UPF1, 1B domain 340 429 IPR040812 -
Lan17g0384 1266 MobiDBLite consensus disorder prediction 88 102 - -
Lan17g0384 1266 MobiDBLite consensus disorder prediction 954 987 - -
Lan17g0384 1266 MobiDBLite consensus disorder prediction 1228 1266 - -
Lan17g0384 1266 Gene3D - 571 623 - -
Lan17g0384 1266 Pfam AAA domain 698 893 IPR041679 -
Lan17g0384 1266 CDD SF1_C_Upf1 721 910 IPR041679 -
Lan17g0384 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 944 IPR027417 -
Lan17g0384 1266 CDD ZBD_UPF1-like 136 258 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lan17g0384 1266 Gene3D - 449 719 IPR027417 -
Lan17g0384 1266 Pfam AAA domain 592 688 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0384 Lan-Chr17 2857486 2874803 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0384 K14326 - gmx:100795594 2345.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0384 17 2857486 2874803 Lan18g0934 18 14605023 14622097 LSH
Lan17g0384 17 2857486 2874803 Lan6g0314 6 2407389 2420434 LSH