Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1155 ATGGGAAAAGAGAAAAAAACGGAACCGAAGAATGAGACTGAGAAGAAACCAAACGAAGGAAAAGGAGAAAAGAAAAACGACGCACCCGCTTCCGTCGTTTTGAACCTAGATTTACACTGCGAGGGTTGTGTAAAGAAAATCAAAAAAGCCGTTCGTCATTTCGATGGTGTAGAAGACGTTATTGCTGATATTTCCGCTAATAAATTAACCGTTATCGGAAAAGTTGATCCCGCTAAGTTGCGAGATAAATTGGCTGAGAAAACGAAGAAGAACGTCGATCTCGTTTCGTCAAATGCTAAGAAAGATGCCGGCGGTGATAAACCGCCGGTGAAGAAGTCGGAAGAGAAGAAATCCGATGAGAAAAAGACGGAAGAGAAGAAAACCGGCGACAAAAAGATGGAAGAGAAGAAACCGAAAAAGAGCACGGTGGTTTTGAAGACCAGTCTGCACTGTGACGGTTGCATTCAGAAAATTCGGAAGATTATACTCAAGTTCAAAGGAGCTGAATCAGTTGACATTGATGGAGGCAAGGATTTGATAACGGTTGAAGGAACAATGGATGTTAAAGAATTGGTATCATACCTAAACCAGAAACTGAAGCGTAACGTTGAGGTTGTCCCACCTAAAAAGGACAAAGACAAAGACAAAGAAAGTGAGAAGAAAGAAGAGAAGAAGAAGAATAAGAATAAGGAAAGTGGTGAGAAAAAAGAGGAAGGTGCAGTTATTAAGATAGTAGAAGTGAACAAAATGGAGCATCATGGTTATGGATACCCACATGCTCCTATGTACGTTCAAACATCATCAGGGTATAATGGTAATTATGAGATGGATCAAGGATACAATAATCAACAACAACAACAACATTATTATGGTTATATGCATCCTCAAAATTATCCTCCTCCTCCACAAATGTTCAGTGATGAGAATCCTAATGCTTGTTCCATGATGTGA 951 0.3975 MGKEKKTEPKNETEKKPNEGKGEKKNDAPASVVLNLDLHCEGCVKKIKKAVRHFDGVEDVIADISANKLTVIGKVDPAKLRDKLAEKTKKNVDLVSSNAKKDAGGDKPPVKKSEEKKSDEKKTEEKKTGDKKMEEKKPKKSTVVLKTSLHCDGCIQKIRKIILKFKGAESVDIDGGKDLITVEGTMDVKELVSYLNQKLKRNVEVVPPKKDKDKDKESEKKEEKKKNKNKESGEKKEEGAVIKIVEVNKMEHHGYGYPHAPMYVQTSSGYNGNYEMDQGYNNQQQQQHYYGYMHPQNYPPPPQMFSDENPNACSMM* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1155 316 CDD HMA 149 184 IPR006121 GO:0046872
Lan5g1155 316 MobiDBLite consensus disorder prediction 104 142 - -
Lan5g1155 316 Coils Coil 218 238 - -
Lan5g1155 316 CDD HMA 38 86 IPR006121 GO:0046872
Lan5g1155 316 Gene3D - 28 102 - -
Lan5g1155 316 SUPERFAMILY HMA, heavy metal-associated domain 34 86 IPR036163 GO:0046872
Lan5g1155 316 ProSiteProfiles Heavy-metal-associated domain profile. 38 86 IPR006121 GO:0046872
Lan5g1155 316 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 275 IPR044594 GO:0046872
Lan5g1155 316 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 285 316 IPR044594 GO:0046872
Lan5g1155 316 MobiDBLite consensus disorder prediction 205 237 - -
Lan5g1155 316 SUPERFAMILY HMA, heavy metal-associated domain 141 197 IPR036163 GO:0046872
Lan5g1155 316 MobiDBLite consensus disorder prediction 1 26 - -
Lan5g1155 316 Gene3D - 136 213 - -
Lan5g1155 316 Pfam Heavy-metal-associated domain 37 88 IPR006121 GO:0046872
Lan5g1155 316 Pfam Heavy-metal-associated domain 149 199 IPR006121 GO:0046872
Lan5g1155 316 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 275 - -
Lan5g1155 316 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 285 316 - -
Lan5g1155 316 MobiDBLite consensus disorder prediction 95 142 - -
Lan5g1155 316 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1155 Lan-Chr5 24840939 24843448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1155 - - gmx:100795652 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1155 5 24840939 24843448 Lan5g1155 5 24840939 24843448 ECH
Lan9g0417 9 6033326 6035797 Lan5g1155 5 24840939 24843448 LSH
Lan5g1155 5 24840939 24843448 Lan19g0230 19 2336643 2338899 LSH