Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0566 ATGATGGATCTGATTTCGGGTTTACCTGAAGACATAGCCAGAGAGTGTCTGATTCGGGTTTCGTACCAGCAGTTCCCGGCGGTGGCGTCGGTGTGCAAAGTATGGAAGACGGAGATTGCGTCACCGGAGTTTCGCCGTCAACGGCGGAGCACAGGGCACGCCCAGAATATCCTTATAATGGTTCAAGCAAGGCCTGAACCGGAGAATTCTGAAACCGGTTCAACAAAACGCATAAAAAACCCGGTTTATTTTCTCAGCGCATTTGAACCGGAAACCGGAACCTGGACCGAGTTGCCACCGTTACCGGGTTTCGAATCTGGTTTACCAATGTTCTGTCAATTAACCGGAGTTGGACCGGATCTTGTTATAATTGGCGGTCTAGACCCGATGACGTGGAAGGCTTCTAATTCGGTTTTTATTTATAACTTCTTAACCGCTAAGTGGAGACGTGGGACCCACATGCCAGGTCAGCCACGTAATTTTTTCGCTTGTGTGTCAGATTCTCATGGAAGAGTGTACGTGGCGGGTGGTCATGATAACGAGAAGAACGCACTACGTTCAGTTTTGGCATATGACGTGGCATCTGACTTGTGGGTCCCACTGCCAGATATGACAACGGAGCGAGACGAGTGCAAGGCCGTGTTCCACCACGGAAGGTTGTATGTTGTTGGCGGTTATTCTACGGAGGCGCAGGGGCAGTTTGGGAAGAGCACGGATGTGTTTGATTTTGCCACGTGGCAGTGGAGCCTAGTGGACGAGTTTTTGGATTATGCCACGTGTCCGAGGACATTAGTGGATAGCAATGATGATGATGGTGACGATGTTTATATATGTTGTGATGGTGAGTTGATGGTAATGGAGAATGCAACGTGGCAGAAACTAGCTTCGATTCCGAGCGAGACTCGACATGTGGCACATGTTGGAGTGCTTGATGGGGTAGTGTTAGTCATTGGATCTAGTGGATATGGTGAAGAGTATGAAAGTTTAGTCTTTGATGTAAAGAATAATAGTTGGAGAAAATTGGACAGCCCAAAAGGGTTTAGGGGACATGTTCAAACAGGTTGGATTTTGAAGATTTAG 1080 0.4787 MMDLISGLPEDIARECLIRVSYQQFPAVASVCKVWKTEIASPEFRRQRRSTGHAQNILIMVQARPEPENSETGSTKRIKNPVYFLSAFEPETGTWTELPPLPGFESGLPMFCQLTGVGPDLVIIGGLDPMTWKASNSVFIYNFLTAKWRRGTHMPGQPRNFFACVSDSHGRVYVAGGHDNEKNALRSVLAYDVASDLWVPLPDMTTERDECKAVFHHGRLYVVGGYSTEAQGQFGKSTDVFDFATWQWSLVDEFLDYATCPRTLVDSNDDDGDDVYICCDGELMVMENATWQKLASIPSETRHVAHVGVLDGVVLVIGSSGYGEEYESLVFDVKNNSWRKLDSPKGFRGHVQTGWILKI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0566 359 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 2 359 - -
Lan5g0566 359 SUPERFAMILY F-box domain 2 54 IPR036047 GO:0005515
Lan5g0566 359 SMART kelc_smart 120 168 IPR006652 GO:0005515
Lan5g0566 359 SMART kelc_smart 171 218 IPR006652 GO:0005515
Lan5g0566 359 SUPERFAMILY Kelch motif 80 347 IPR015915 GO:0005515
Lan5g0566 359 Gene3D - 44 354 IPR015915 GO:0005515
Lan5g0566 359 PANTHER OS02G0208700 PROTEIN 2 359 IPR044595 GO:0080037|GO:2000762
Lan5g0566 359 Pfam Kelch motif 116 155 IPR006652 GO:0005515
Lan5g0566 359 Pfam Kelch motif 211 250 IPR006652 GO:0005515
Lan5g0566 359 Pfam Kelch motif 169 204 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0566 Lan-Chr5 11329645 11331059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0566 5 201 EF-hand Containing Proteins AT4G39560 27.638 7.56e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0566 - - ccaj:109808365 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0566 5 11329645 11331059 Lan2g0449 2 4877103 4878505 LSH
Lan10g0230 10 1467568 1469204 Lan5g0566 5 11329645 11331059 PCT
Lan5g0566 5 11329645 11331059 Lan10g0230 10 1467568 1469204 PCT