Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0230 ATGGAGCTTATTTCAGATTTACCAGAGGACGTAGCCCGAGACTGTCTGGTTCGGGTGTCGTACCAGCAGTTTGCGGCGGTAGCCTCCGTCTGCAAAAAGTGGAAGACGGAGATTCAGTCGCCGGAGTTTTGCCGGAGGAGAAGAGCCATCGGTAAAACCCAGAAAATAGTTGTAACTGTTCAATCGAGGATGGAACCGGATAAATGCGGAGCTGGGTTGTTAGTTAAATCAACTATGAACCCGGTTTATCGGCTCAGTGTCCTCGAACCGGAAACCGGAATCTGGAGCGAGTTACCGGTTCCACCCGGTTTTGACGGTGGTTTACCCGTTTTCTGTCAGTTAGTTGGTGTTGGATATGATGTTGTTGTTATGGGCGGGTGGGACCCAGATTCGTTGAAACCTTCTAATTCGGTTCTTATCTATAATTTCATGTCGGGGACGTGGCGAAGTGGGACCGACATTCCTGGTGGGGCCCGCACGTTCTTTGCATGTGCGACTGACTCAGCTCGAACTGTATACGTGGCAGGTGGACATGACGAGGAAAAGAATGCTCTGAGGTCAGCATATGCATATGACGTGCTATCTGACTTGTGGATACCGATGCCAGATATGGCAATGGAGCGTGACGAATGCAAAGCTATGTTATATGGTAGTGGTGGTGGTAGTGATAATAGCTTATGCATTATCGGTGGTTATTGCACTGAGATGCAAGGGCAATTCGAGAGAAGTGCCGAAGTCTTCGATTTTGCCACATGGAAATGGAGTCCGATGATGGATGAGTTCTTGGATGATGCCATGTGTCCGAGAACGTGCGTTAATGGTGGTGGTGATGGTGACAAGAGATTGTACATGTGCAGCGGGAGTGACGTGGTGGCATTGATGGACTCAACGTGGCAAAGAGTGGCAAAAGTGCCAAGTGAGATACGCAATGTTGCATGCGTTGGAGCGTGGGAAGGGGCAGTGTTGTTGATTGGGTCAAGTGGGTTGGGGAAACCATATATGGGGTTTGTATTGGATGTGAAGAGTGGTGTTTGGACTAAAATTGTGAGCCCAGATAACTACACGGGTCACGTACAATCTGGTTGCTTTTTGGAAATTTAG 1101 0.4877 MELISDLPEDVARDCLVRVSYQQFAAVASVCKKWKTEIQSPEFCRRRRAIGKTQKIVVTVQSRMEPDKCGAGLLVKSTMNPVYRLSVLEPETGIWSELPVPPGFDGGLPVFCQLVGVGYDVVVMGGWDPDSLKPSNSVLIYNFMSGTWRSGTDIPGGARTFFACATDSARTVYVAGGHDEEKNALRSAYAYDVLSDLWIPMPDMAMERDECKAMLYGSGGGSDNSLCIIGGYCTEMQGQFERSAEVFDFATWKWSPMMDEFLDDAMCPRTCVNGGGDGDKRLYMCSGSDVVALMDSTWQRVAKVPSEIRNVACVGAWEGAVLLIGSSGLGKPYMGFVLDVKSGVWTKIVSPDNYTGHVQSGCFLEI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0230 366 Gene3D - 73 358 IPR015915 GO:0005515
Lan10g0230 366 SMART kelc_smart 120 168 IPR006652 GO:0005515
Lan10g0230 366 SMART kelc_smart 171 218 IPR006652 GO:0005515
Lan10g0230 366 SUPERFAMILY F-box domain 3 48 IPR036047 GO:0005515
Lan10g0230 366 Pfam F-box domain 4 43 IPR001810 GO:0005515
Lan10g0230 366 Gene3D - 1 57 - -
Lan10g0230 366 Pfam Kelch motif 171 204 IPR006652 GO:0005515
Lan10g0230 366 Pfam Kelch motif 109 156 - -
Lan10g0230 366 SMART fbox_2 7 47 IPR001810 GO:0005515
Lan10g0230 366 SUPERFAMILY Kelch motif 81 348 IPR015915 GO:0005515
Lan10g0230 366 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 366 - -
Lan10g0230 366 PANTHER OS02G0208700 PROTEIN 1 366 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0230 Lan-Chr10 1467568 1469204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0230 4 201 EF-hand Containing Proteins AT4G39560 25.373 2.77e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0230 - - gmx:100786398 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0230 10 1467568 1469204 Lan5g0566 5 11329645 11331059 PCT
Lan10g0230 10 1467568 1469204 Lan2g0449 2 4877103 4878505 PCT
Lan5g0566 5 11329645 11331059 Lan10g0230 10 1467568 1469204 PCT
Lan2g0449 2 4877103 4878505 Lan10g0230 10 1467568 1469204 PCT