Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0565 ATGGTTGCTTCTCTTCCTCCAAAGGAATCCAATCTCTTCAAGCTTATCGTCAAATCATATGAAACCAAGCAATATAAAAAGGGCCTGAAAGCAGCCGATGCCATTTTGAAAAGATTTCCAGACCATGGAGAAACATTATCAATGAAGGGGTTGACATTAAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGATTGAAGAACGATCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTATCGGGCGGACAGAGAATACAGGGAGGCGATCAAGTGCTACCGAAATGCACTTAAAATAGACCCTGACAATATTGAAATCTTGCGTGACCTTTCACTCTTACAGGCTCAAATGCGAGACTTAACTGGATTTGTTGAGACAAGACAAAAACTTTTAACTCTGAAGCCAAATCATCGCATGAACTGGATAGGCTTTACTGTTGCCCATCATTTGAACTCTGATCCGTCCAAGGCTGTTGAAATTTTGGAAGCATATGAAGGGACTTTAGAAGATGATAATCCTCCAGAAAATGAACTGTGTGAGCATGGGGAAATGCTTTTATATAAGATCTCTTTGCTAGAGGAATGTGGATTTCTTGAGAGAGCTCTAGAGGAGTTGCATAAGAAAGAGTCAAATATTATTGATAAAGTTTCATATAAAGAACAAGAAGTTTCACTTCTAGTAAAGCTTGGTCGCTTAGAAGAAGGTGAAACTCTGTACCGGGCATTACTTTCCATGAATCCAGATAATTACAGATACTATGAAGGTCTCCAAAAATGTGTTGGGTTGTATTCAGAAAATGGCCACTTCTCTCCTGATGAGATAGATCGGTTAGATTCCTTGTACAGAACACTTGGGCAGCAATATAAGCGATCTTCTGCAGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCGGCAGGCAGTTATATAAGGCATCTCCTAACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTTCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGATTTAGAACATTCAATTAAGACGTCAGGCCAATATCCTGGGAGGGTGGAAAAAGAACCACCTTCAACTCTTCTTTGGACTTTATTTTTATTGGCTCAGCATTATGACAAACGGGGCCAATATGATCTCGCTCTTTCTAAAGTTGACGAGGCTATAGAACACACACCTACTGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAACATGCCGGTGATTCGGCTGCAGCTGCTGCATTTGCTGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGTGTTAAGCGCATGCTACAGGCTGATCAGGTGGCATTGGCAGAGCAAACTGCTGTACTGTTCACAAAAGAAGGTGATCAACACACTAACCTTCACGACATGCAGTGCATGTGGTATGAGCTTGCTTCTGGTGAAAGCTTTTTCCGCCAGGGTGATCTTGGTCGGGCACTCAAGAAATTTTTAGCGGTGGAGAAGCATTATGCAGATATTACCGAAGACCAATTTGATTTTCACTCATACTGCTTAAGGAAAATGACTTTGCGTACTTATGTAGAAATGCTCAAATTTCAAGACCGATTGCACTCACACATATATTTTCATAAAGCAGCAGCTGGAGCTATCAGGTGTTATATTAACTTGTATGATTCTCCCCCAAAGTCTACAGCCGAGGAAGATGATGATACGTCAAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGACAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAGAAAGAGGCAGAAGAAAAGAATGAAGAGTTAGGTGCCACTGGGGTATCAAAGTCTGGGAAACGGAATGTAAAACCTGTTGATCCTGATCCACATGGGGAGAAGTTGGTGCAGGTTGAAGATCCACTATTGGAAGCCACAAAATACTTGAAGTTGCTGCAGAAGAGTTCACCTGATTCATTGGAGACACATTTGCTCTCGTTTGAAATATATTCAAGAAAACAGAAGATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTGCTGAGGTTGGATGCTGAGCACCCTGATACTCATCGTTGCTTGCTAAAGTTCTTCCATAAAGTGGGATCCATCAATGCTCCTGTGACTGACAGCGAGAAGCTGATTTACAGTGTCCTAGAAGCTGAGCGCCCAACTATTAGTCAGCTGCACGACAAATCTCTGTTCGAGGCAAATGACTCTTTCCTTGAAAAGCATAAAGATTCTTTGACGCATAGAGCAGCTTTTGCGGAAATTTTATACATTTTGGATTCAAACAGGAAGTCTGAGGCCGTCGAGTTCATTGAAGGGTCAACAAATAACCTTGTTCCAAGAAATGGAGCACTTGGACCAATCAAGGAGTGGAAACTTATAGACTGCATTGCAGTCCACAAACTTCTTGGAGCAGTACTTGTTGAACCAGATGCTGCAGCTAGATGGAAAGTGCGTTGTGCAGAGTACTTCCCTTATTCTACATACTTTGAAGGCAACCTCAGTTCTGCGTCTCCCAACTCAGTCTTCAATCAGCTACATAAGAACTCTGAGAATGAGAGTCCTAACCATTCACATGATGGCCAAAGTGTGGGCTCCATCAAATCAAATACGAATATAGCGGCATTTAAAGATCTCACTATCTAA 2706 0.4128 MVASLPPKESNLFKLIVKSYETKQYKKGLKAADAILKRFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRADREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHRMNWIGFTVAHHLNSDPSKAVEILEAYEGTLEDDNPPENELCEHGEMLLYKISLLEECGFLERALEELHKKESNIIDKVSYKEQEVSLLVKLGRLEEGETLYRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDRLDSLYRTLGQQYKRSSAVKRIPLDFLQGDKFREAAGSYIRHLLTKGVPSLFSDLSSLYNHPGKADILEQLILDLEHSIKTSGQYPGRVEKEPPSTLLWTLFLLAQHYDKRGQYDLALSKVDEAIEHTPTVIDLYSVKSRILKHAGDSAAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEQTAVLFTKEGDQHTNLHDMQCMWYELASGESFFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDRLHSHIYFHKAAAGAIRCYINLYDSPPKSTAEEDDDTSKLLPSQKKKLRQKQRKAEARAKKEAEEKNEELGATGVSKSGKRNVKPVDPDPHGEKLVQVEDPLLEATKYLKLLQKSSPDSLETHLLSFEIYSRKQKILLAFQAVKQLLRLDAEHPDTHRCLLKFFHKVGSINAPVTDSEKLIYSVLEAERPTISQLHDKSLFEANDSFLEKHKDSLTHRAAFAEILYILDSNRKSEAVEFIEGSTNNLVPRNGALGPIKEWKLIDCIAVHKLLGAVLVEPDAAARWKVRCAEYFPYSTYFEGNLSSASPNSVFNQLHKNSENESPNHSHDGQSVGSIKSNTNIAAFKDLTI* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0565 901 Gene3D - 505 725 - -
Lan5g0565 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 880 - -
Lan5g0565 901 MobiDBLite consensus disorder prediction 580 594 - -
Lan5g0565 901 Gene3D - 2 503 - -
Lan5g0565 901 PIRSF NAT_A 1 818 IPR021183 -
Lan5g0565 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lan5g0565 901 MobiDBLite consensus disorder prediction 861 886 - -
Lan5g0565 901 PANTHER BNAC02G23120D PROTEIN 10 880 - -
Lan5g0565 901 MobiDBLite consensus disorder prediction 606 622 - -
Lan5g0565 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lan5g0565 901 MobiDBLite consensus disorder prediction 580 644 - -
Lan5g0565 901 Coils Coil 596 624 - -
Lan5g0565 901 Pfam TPR repeat 84 123 - -
Lan5g0565 901 SUPERFAMILY TPR-like 233 447 IPR011990 GO:0005515
Lan5g0565 901 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Lan5g0565 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Lan5g0565 901 SMART tpr_5 43 76 IPR019734 GO:0005515
Lan5g0565 901 SMART tpr_5 380 413 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0565 Lan-Chr5 11281073 11294946 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0565 K20792 - gmx:100793968 1559.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2083 6 31440363 31459256 Lan5g0565 5 11281073 11294946 PCT
Lan10g0228 10 1442915 1456026 Lan5g0565 5 11281073 11294946 PCT
Lan5g0565 5 11281073 11294946 Lan6g2083 6 31440363 31459256 PCT
Lan5g0565 5 11281073 11294946 Lan10g0228 10 1442915 1456026 PCT