Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0228 ATGGCTGCTTCTCTTCCTCCTAAAGAGGCCAACCTCTTCAAACTTATTGTTAAATCTTATGAGACCAAACAATACAAAAAGGGCCTCAAAGCAGCTGATGCCATTTTGAAAAAATTTCCACACCATGGAGAGACTTTATCAATGAAGGGGTTGACTTTAAATTGCATGGATCGTAAGTCTGAAGCATACGAACTTGTTCGCCAAGGGCTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTACCGGTCAGACAGAGAATACAGGGAGGCAATCAAATGCTACCGAAATGCACTGAGAATAGACCCTGACAATCTTGAAATCTTACGTGACCTATCACTCTTACAGGCACAAATGCGAGATTTAGCTGGCTTTGTTGAGACACGACAGCAACTTCTGACTCTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTAAACTCCAATGCATCAAAGGCAGTGGAAATCCTGGAAGCATATGAAGGGACATTAGAAGATGACTTTCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATATAAGATCTCTTTGTTAGAGGAATGCGGATTTCTTGAGAGAGCTCTAGAGGAGTTGCACAAAAAAGAAATAAAAATTGTTGATAAGCTTGATTATAAAGAACAAGAGGTTTCACTTTTAGTGAAGCTTGGCCGCTTTGAAGAAGGCGAGAAATTGTATCGGGAATTATTGTCCATGAATCCTGACAATTATAGATATTATGAGGGCCTCCAAAAATGTGTTGGATTATATTCAGAAAATGGTCATTTTTCTCCTGATGAAATTGATCGGTTAGATGCCCTGTACACAACACTGAGGGAGCAATTTAAGATGTCTTCTGCTGTTAAGAGAATACCATTAGATTTTCTACAAGATGACAGATTTAGAGAAGCAGCAGATAGTTATATTAGGCCTCTCCTGACTAAGGGAGTTCCATCTCTGTTCACTGATCTTTCTTCTTTGTACAATCACCCTGGGAAGGCAGACATTCTGGAACAACTTATTCTCGAGTTAGAGAACTCAATTAGGACAACTGGTCAGTACCCTGGGAGGGTTGAAAAGGAGCCTCCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGGCGGGGTCAATATGAAACTGCTCTTTCTAAAATCAACGAGGCTATAGAACACACACCTACCGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGTGTTAGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAATCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCTATGACCGCCAAGGTGATCTGGGACTAGCTCTCAAGAAATTTCTAGCAGTGGAGAAGCATTATTCAGATATCACTGAAGATCAATTTGATTTTCATTCATACTGTTTAAGGAAAATGACATTGCGCACGTATGTGGAAATGCTCAAGTTTCAGGATAGATTGCACTCACATGCTTATTTTCGTAAAGCAGCTGCTGGAGCTATTAGATGTTATATTAAATTGCATGATTCTCCTCCAAAGTCAACGACTGAGGAAGACAATGAAATGTCCAAGTTGCTTCCTTCTCAGAAAAAGAAACTGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTCAGAAAGAGGCAGAAGAAAAAAATGAAGAACCAAGCGCTGGTGGGGTATCCAAGTCTGGGAAGCGGCCTACAAAACCTGTTGATCCTGATCCACGTGGGGAAAAGTTGTTGCAGGTTGAAGATCCATTGTCTGAAGCCACAAAATACTTGAAGTTGCTGCAGAAGCATTCACCTGATTCATTGGAGACACATTTGCTCTCTTTTGAATTATATATGAGAAAGCAGAAGGTTTTGCTTGCCTTCCAGGCTGTAAAGCAGTTGCTGAGGTTGGATGCTGAACATCCGGATTCTCATCGTTGCCTGATTAAATTCTTCCACAAAGTGGGATCCATGAATGCCCCTGTGACTGACAGTGAGAAACTTATTTGGGGTGTCCTAGAAGCTGAGCGCCAAACTATCAGTCAGCTGCATGGGAAATCTCTGTTTGAGGCAAATAACTCTTTCCTTGAAAAACATAAAGATTCATTGATGCACAGAGCTGCTTTTGGAGAATTGTTGTACATTTTGGATCACAACAGAAAGGCTGAGGCTGTCCAGTTTATTGAAGGGTCAACAAATAACCTTGTGCCAAGAAATGGAGCACTCGGACCGATCAGAGAATGGAAACTTGAAGACTGTATTGCAGTTCATAAACTTCTTGGAACAGTCCTTGTTGATCTGGATGCTGCACTGAGATGGAAAGTGCGTTGTGCAGAGTTTTTCTCCTACTCTACATACTTTGAGGGCAGCAATAGCTCTGCCTCTCCTAACTCTGTTCTGAATAAGATACACAAGAACACTGAAAATGGGAATGCTAACCATTTGGTGGGTGATCATAATATAGATTCAGTCACATCAAATGGGAAACTAGAGGCATTTAAAGATCTCACTATCTCTCAAAGTTAA 2715 0.4147 MAASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPHHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALRIDPDNLEILRDLSLLQAQMRDLAGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAVEILEAYEGTLEDDFPPENERCEHGEMLLYKISLLEECGFLERALEELHKKEIKIVDKLDYKEQEVSLLVKLGRFEEGEKLYRELLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDRLDALYTTLREQFKMSSAVKRIPLDFLQDDRFREAADSYIRPLLTKGVPSLFTDLSSLYNHPGKADILEQLILELENSIRTTGQYPGRVEKEPPSTLMWTLFLLAQHYDRRGQYETALSKINEAIEHTPTVIDLYSVKSRILKHAGDLAAAAVLADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYDRQGDLGLALKKFLAVEKHYSDITEDQFDFHSYCLRKMTLRTYVEMLKFQDRLHSHAYFRKAAAGAIRCYIKLHDSPPKSTTEEDNEMSKLLPSQKKKLRQKQRKAEARAQKEAEEKNEEPSAGGVSKSGKRPTKPVDPDPRGEKLLQVEDPLSEATKYLKLLQKHSPDSLETHLLSFELYMRKQKVLLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNAPVTDSEKLIWGVLEAERQTISQLHGKSLFEANNSFLEKHKDSLMHRAAFGELLYILDHNRKAEAVQFIEGSTNNLVPRNGALGPIREWKLEDCIAVHKLLGTVLVDLDAALRWKVRCAEFFSYSTYFEGSNSSASPNSVLNKIHKNTENGNANHLVGDHNIDSVTSNGKLEAFKDLTISQS* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0228 904 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 884 - -
Lan10g0228 904 MobiDBLite consensus disorder prediction 633 648 - -
Lan10g0228 904 MobiDBLite consensus disorder prediction 577 594 - -
Lan10g0228 904 Pfam TPR repeat 84 123 - -
Lan10g0228 904 Gene3D - 505 725 - -
Lan10g0228 904 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lan10g0228 904 SUPERFAMILY TPR-like 381 782 IPR011990 GO:0005515
Lan10g0228 904 Gene3D - 2 503 - -
Lan10g0228 904 SMART tpr_5 43 76 IPR019734 GO:0005515
Lan10g0228 904 SMART tpr_5 380 413 IPR019734 GO:0005515
Lan10g0228 904 SMART tpr_5 223 256 IPR019734 GO:0005515
Lan10g0228 904 SMART tpr_5 77 110 IPR019734 GO:0005515
Lan10g0228 904 PANTHER BNAC02G23120D PROTEIN 10 884 - -
Lan10g0228 904 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Lan10g0228 904 Coils Coil 596 620 - -
Lan10g0228 904 PIRSF NAT_A 1 818 IPR021183 -
Lan10g0228 904 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lan10g0228 904 MobiDBLite consensus disorder prediction 606 622 - -
Lan10g0228 904 MobiDBLite consensus disorder prediction 575 648 - -
Lan10g0228 904 ProSiteProfiles TPR repeat profile. 380 413 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0228 Lan-Chr10 1442915 1456026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0228 K20792 - gmx:100776968 1551.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2083 6 31440363 31459256 Lan10g0228 10 1442915 1456026 LSH
Lan10g0228 10 1442915 1456026 Lan5g0565 5 11281073 11294946 PCT
Lan5g0565 5 11281073 11294946 Lan10g0228 10 1442915 1456026 PCT