Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0232 ATGGGAGCGAGTCGAAAGCTTCAAGGAGAAATCGATCGTGTTCTCAAGAAGGTCCAAGAAGGTGTTGAAGTATTCGATAGCATCTGGAACAAGGTTTACGATACTGATAATGCGAACCAGAAGGAGAAATTTGAAGCCGATCTGAAGAAGGAGATTAAAAAGCTCCAGAGATATAGAGATCAGATTAAGACTTGGATTCAGTCCAGTGAGATTAAGGATAAGAAGATTAGTGCCTCTTATGAGCAAGCTCTGGTGGATGCACGGAAGCTTATTGAGAAGGAAATGGAAAGGTTTAAGATCTGTGAGAAGGAAATGAAGACCAAAGCATTCTCCAAAGAAGGCTTGGTTCAACAGCCTAAAACTGATCCTAAAGAGAAGGCCAAAGCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGTGAGTTAGAATCTCAGATCGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGAGCAGGCCCCCCAGATTGACACATCTGGAGACATCAATTACTCGGCACAAGGCTCATATAAAGCAATGTGAATTAATCTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTCAAAGATTTCCTGGATGACTACATAGAGCGCAATCAGGATGACTTCGAAGAATTCAGTGATATTGAAGAGCTATACAGCTCTTTACCTTTAGACAAGGTGGAGTCACTTGAAGATCTAGTTACAATTCCCCCTGGTCTTGCTAAGGTGGCACCAGTGCTAAGCTTGAAACCTTCTTTGGCAGCGTCAGCATCACCATCAGCATCGGCATCACAAACATCTGAGCAAGCTGATGACACAGCTTCCCAGGATAGCAATTCTGGCATTGTTGCAACAACTCCACCTTATAAAAATAGTCTAGTTAGTCCTGCTGCTTCAACACCAGCTGGAAATCTTGCTGCTCCGGTTTCTATGAATGTTCCAGCACATAACTTCTCCACTGCACCAGCTGGTGCATCAGTCATGCTTGGTTCAAATTCTGTTCGGAATGTCATGGAGATTACTAATGTTACCAATTCATCTTCTGTAAGTCATACTACCTCAATGAAGGAAGAAGAGATTAATAGCTTCCCTGGCCAGGGACCATCTCCGTCGTTTTCTGATGCTGCACTTGTAGGGAGTTTCAGCAGAAACAGCGTATCTAATCAAACAACAGCTAATATCCCTCTTGCTTCTGGAAACATGGTTTCCACCAACGGGGCCCTTGGTTCAGTTCCTTCAGCCTCTGAAATAACCAAGAGAAACGTATTAGGAGCTGATGATAGACTTGGGAGCAATAGGATAGAACAACCTCTTGTATCCCCCATAAGTAGTAGAATGGTCATGCCTCAGGTTGCTAAGGGTAATGATGGAACTGCCTCAGTTGACTCTAGTAATGTTAATGAAGCTGCAGCTGTGCCGGGGAGAGTTTTCTCTCCTTCTGCGGTTCCTGGCATGCAGTGGAGACCTGGAAGCCCATTGCAGAATCAGAACGATGTGCTTCGTGGAAGAACTGAAATTACTCCTGACCAGAAGGAAAAATATTTGCAAAAGCTTCAGCAAGTGCAGCAACAAGGGCACAGTGCCCTTCTTAATATGCATTCTCTTGCTGGAGGAAATCATAAGCAGTTTTCTGCTCAGCAACAGAATTCTCTCTTGCAACAGTTTAACTCTCAAGGCTCATCAGTTTCTTCTCAACCTGGTCTGGGACTTGGGGTCCAGTCACCAAGTTTCCATGGCATTTCTTCTACCTCATTACAGCTGCCACCCAATTCGCCCCATTCTGCACCCCGCCAACAGCCATTGACGTCAGTTGTTTCTAGCGACGCAGATGCTGGCAATTCTAGGGTTGAAGAACTGCAGCAACAGCAGATTTTCACTGATGACTCTGGGACTGAATCTACTGCTGTGATTGGCAAGAATTTCATAAATGAAGATGATTTGAAATCCCCATATGCTGTAGATTCTCCTTCAGGAGTATCTGCCTCTCTTCCAGAGCCTGGTCAGACTTCTAGAGTAATTGATTTGTCTCCTGGCCAACCCTTGCAAACCAATCAACGTGGTAACCTTGGTGTTATTGGAAGAAGTTTTTCCGAACTTGGACTTGGAGCCGTTAATGATAACTTCAGTGGATCAATTGCTAATTCGGGTGCAATCCGTGATCAATTATATAATTTGCAGATGCTTGATGCAGCCACGACACATTCCAAATTTCCACAACCTAAGGACTCAGAACGTCCTAGGGCCTATTCTCCTAGGCACGCAACGATAACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAACAATCCTGCCTTTTGGGAGAGAGTCAGTCTTGAACCATTTTGCACCGATACCCTGTTCTTTGCATTTTATTATCAACAGAACACTTACCAACAATATTTGGCTGCGAAAGAGTTGAAGAAGCAGTCATGGAGATATCACCGAAAGTATAACACATGGTTTCAACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATACGAGCAGGGAACATACGTGTACTTCGATTTCCATATTGCAAATGATGATATGCAACATGGGTGGTGTCAAAGAATCAAGACAGAATTCACCTTTGAGTACAATTATCTGGAAGATGAGCTTTTTGCCTAG 2670 0.4367 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKISASYEQALVDARKLIEKEMERFKICEKEMKTKAFSKEGLVQQPKTDPKEKAKAETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKQCELILRLLDNDELSPEQVNDVKDFLDDYIERNQDDFEEFSDIEELYSSLPLDKVESLEDLVTIPPGLAKVAPVLSLKPSLAASASPSASASQTSEQADDTASQDSNSGIVATTPPYKNSLVSPAASTPAGNLAAPVSMNVPAHNFSTAPAGASVMLGSNSVRNVMEITNVTNSSSVSHTTSMKEEEINSFPGQGPSPSFSDAALVGSFSRNSVSNQTTANIPLASGNMVSTNGALGSVPSASEITKRNVLGADDRLGSNRIEQPLVSPISSRMVMPQVAKGNDGTASVDSSNVNEAAAVPGRVFSPSAVPGMQWRPGSPLQNQNDVLRGRTEITPDQKEKYLQKLQQVQQQGHSALLNMHSLAGGNHKQFSAQQQNSLLQQFNSQGSSVSSQPGLGLGVQSPSFHGISSTSLQLPPNSPHSAPRQQPLTSVVSSDADAGNSRVEELQQQQIFTDDSGTESTAVIGKNFINEDDLKSPYAVDSPSGVSASLPEPGQTSRVIDLSPGQPLQTNQRGNLGVIGRSFSELGLGAVNDNFSGSIANSGAIRDQLYNLQMLDAATTHSKFPQPKDSERPRAYSPRHATITPPSYPQVQAPIVNNPAFWERVSLEPFCTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDELFA* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0232 889 Coils Coil 41 61 - -
Lan5g0232 889 PANTHER CCR4 NOT-RELATED 1 887 IPR040168 GO:0030015
Lan5g0232 889 MobiDBLite consensus disorder prediction 268 298 - -
Lan5g0232 889 PIRSF NOT_su_3_5 1 889 IPR012270 GO:0006355|GO:0030015
Lan5g0232 889 PANTHER BNAA10G16600D PROTEIN 1 887 - -
Lan5g0232 889 Gene3D - 726 884 IPR038635 -
Lan5g0232 889 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Lan5g0232 889 Pfam NOT2 / NOT3 / NOT5 family 747 883 IPR007282 GO:0006355
Lan5g0232 889 MobiDBLite consensus disorder prediction 565 628 - -
Lan5g0232 889 MobiDBLite consensus disorder prediction 746 772 - -
Lan5g0232 889 MobiDBLite consensus disorder prediction 359 379 - -
Lan5g0232 889 MobiDBLite consensus disorder prediction 659 678 - -
Lan5g0232 889 Coils Coil 132 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0232 Lan-Chr5 2851630 2861621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0232 K12580 - gmx:100780204 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0728 10 8774887 8787234 Lan5g0232 5 2851630 2861621 LSH
Lan5g0232 5 2851630 2861621 Lan8g1021 8 12167980 12177123 LSH
Lan10g0728 10 8774887 8787234 Lan5g0232 5 2851630 2861621 PCT
Lan5g0232 5 2851630 2861621 Lan5g0232 5 2851630 2861621 PCT
Lan5g0232 5 2851630 2861621 Lan8g1021 8 12167980 12177123 PCT
Lan5g0232 5 2851630 2861621 Lan10g0728 10 8774887 8787234 PCT
Lan8g1021 8 12167980 12177123 Lan5g0232 5 2851630 2861621 PCT