Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0203 ATGTCTGTTAACAATAATAACCCTTCAAAGGGAATTGGATCATCTTCTTCAACCTTTGGAAATGGATCCACTTCAAACCCTGGATTTTCACAATCCCAAATTGGTGCTGGTTTTCAAGGACAATTTCCAATTTCCCAAGCTCATGCAATTGCACAAGCACAATCTAAAGCTGTTCATGCTCAAGCTGCTGCTGCAGCTCATGCTCAGCTTCAGGCTCATTTACAAGCTCAAGGCTTGATGAATCTTAACCAGAGTCAGTCTGGTGGTGGTTTAGGGAACGTGTCTGGTTCGGCACCTGGTAATCCTAGTGGGAAGCGTATGCCTTTGAAACCCCCTATGCGTCCCGTTGGATTTTCGCCTGGGAATAGCTTCTCGCCTTTGAGGCCGATGGAACTCACGCCTGCTGCGTTGAATAGAAGGAAGAAGCAGAAGCTCCCTGAAAAACAGCTGCACGAGAAAGTGGCGGCTATGCTGCCTGAGTCTGCTATGTACACTCAGCTTCTCGAGTTTGAGTCTCGTGTTGATGCTGCGCTTTCTAGAAAGAAGGTTGATATCCAGGAAGCGCTTAAGAATCCACCTTGTATTCAGAAAACGCTCCGGATATATGTTTTTAATACTTTTAGTAATCAAAACTGTACAATTCCGAAGAAGGTGAATGCTGAGCCGCCTACCTGGACGCTGAAGATAGTTGGGAGGATATTGGAAGATGGTGTAGACCCTGATCAGCCAGGAGTAGTTCAGAAGTCATCTGCATTGTATCCGAAGTTCTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTGGATCAGAAACTCTATCCTGAAAATCACGTGATTATATGGGATAATTCTCGATCACCTGTTCCTCACGAAGGTTTTGAAGTTAAGAGGAAAGGAGACAAAGAATTCACAGCGAGTATTCGGTTGGAAATGAATTATGTACCTGAGAAGTTTAAGCTATCACAAGCATTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGGCCAAGAGTTATTGCTGCTATCTGGCATTATGTGAAGGCCAGGAAATTGCAAAACCCAAATGATCCTTCTTTTTTTCACTGTGATCCACCTCTTCAGAAAGTATTTGGGGATGAAAAGATGAAGTTTACAATGGTTTCACAGAAAATATCACACCATTTGTTCCCTCCGCAGCCTATACTGTTGGAGCATAGGATTAAGCTTTCAGAAAACAGTCCACCCGGAACTGCTTGTTATGATGTGACGGTTGATGTTCCTTTTCCTATTCAGAGGGAGTTGTCTGCATTATTGGCTAATGTGGAGAAGAATAAAGAGATTGATACATGCGATGAAGCAATATGTGGAATCATTAGAAAAATCCATGAGCACCGTAGGAGACGAGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAGTCTCAGAGCAAGGATTTGAAACTTGTAGCTGGAGAACCCAGTCGCAATGCCGAAAAAGAGCGTCATTCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGCTATTTGAATCGCAAACCGGATGCACCTGGAAGCACATAA 1587 0.4304 MSVNNNNPSKGIGSSSSTFGNGSTSNPGFSQSQIGAGFQGQFPISQAHAIAQAQSKAVHAQAAAAAHAQLQAHLQAQGLMNLNQSQSGGGLGNVSGSAPGNPSGKRMPLKPPMRPVGFSPGNSFSPLRPMELTPAALNRRKKQKLPEKQLHEKVAAMLPESAMYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFSNQNCTIPKKVNAEPPTWTLKIVGRILEDGVDPDQPGVVQKSSALYPKFSAFFKRVTISLDQKLYPENHVIIWDNSRSPVPHEGFEVKRKGDKEFTASIRLEMNYVPEKFKLSQALTEVLGIEVDTRPRVIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGDEKMKFTMVSQKISHHLFPPQPILLEHRIKLSENSPPGTACYDVTVDVPFPIQRELSALLANVEKNKEIDTCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVAGEPSRNAEKERHSDFFNQPWVEDAVIRYLNRKPDAPGST* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0203 528 Gene3D SWIB/MDM2 domain 309 393 IPR036885 -
Lan5g0203 528 ProSiteProfiles SWIB/MDM2 domain profile. 312 389 IPR003121 -
Lan5g0203 528 SUPERFAMILY SWIB/MDM2 domain 307 397 IPR036885 -
Lan5g0203 528 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 81 523 - -
Lan5g0203 528 MobiDBLite consensus disorder prediction 83 129 - -
Lan5g0203 528 CDD SWIB_like 319 387 - -
Lan5g0203 528 SMART swib_2 313 392 IPR019835 -
Lan5g0203 528 Pfam SWIB/MDM2 domain 316 387 IPR003121 -
Lan5g0203 528 MobiDBLite consensus disorder prediction 83 100 - -
Lan5g0203 528 MobiDBLite consensus disorder prediction 1 34 - -
Lan5g0203 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 81 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0203 Lan-Chr5 2434220 2437164 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lan5g0203 SWIB 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0203 K11650 - gmx:100776562 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0203 5 2434220 2437164 Lan5g0203 5 2434220 2437164 ECH
Lan5g0203 5 2434220 2437164 Lan20g1425 20 20922915 20925549 LSH
Lan3g1656 3 28819195 28821969 Lan5g0203 5 2434220 2437164 PCT
Lan5g0203 5 2434220 2437164 Lan3g1656 3 28819195 28821969 PCT