Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1656 ATGTCTGAGAACAATGGTATGCCTTCTAAGGGCCCTGGTGGCTCTATGTCACCTTTTGGAAACGCCGGAATAGGATTCCATTCGACATCGGGAAACCCCGGATTTTCGTATTCCCAACCCCAGATTCCGGCTGGTTTTCAGGGTCAGTATATGTTGTCCCAAGCTCAAGCCCATGCCATTGCCCAAGCCAATGCCCAAGCTCAGTTCCAGGCTCAGTTACAAGCTCACGGGCTGAATCTTAATCAGAATTTCGGTGTGCCGCGGTCCTCTTTCTCAGCATTGGCTGGTAATGCAATTGCGAAGCGTTTACCTATGAAAGCCCCGACTCTGCCTGTTGGGTTTTCGCCTCTGAAGCCTGTGGAACTTATGCCTGGTGCTCGGAGAAAGAAACAGAAGCTCGATGAGAAGCATCTTCAGGATAGAGTTGCTACTGTTCTGCCCGAGTCTGCTATTTACACACAGCTTCTCGAGTTTGAGGCTCGTGTGGATGCTTTGTATGCTAGAAAGAAGATTGACATCCAAGAAGCACTTAAAAACCCGCCTTGCATTCAGAAAACACTTCGTATTTACGTGTTCAACACTTTCGCTAACCAAACTCACACGTTTCCTACGAGGTCGAATGCTGAACCTCCTACTTGGACCCTTAAGATAGTTGGGAGAATATTGGAAGATAATGAAGAACCTGATCAACCTGGAGGTGTTCAGAAGTCAACTGAGTCATATCCGAAGTTTTCGTCGTTCTTCAAAAGAGTTACCATTAGTTTAGATCAGAGACTGTATCCCGATAATCACATTATTAAGTGGGAGAATGCTCGATCAGCTGCTCCTCATGAAGGTTTTGAAGTTAAGAGGAAAGGGGATAAAGAATTTTCAGCGCATATACGTTTGGAAATGAACCATATACCTGAGAAATTTAAGCTTTCACCAGCATTGAAAGAAGTCCTCGGTATTGAGGTCGACACTCGACCAAGAATTATTGCTGCTATATGGCACTATGTGAAGGCCAGGAAATTACAGAACCCAAATGATCCTTCTTTCTTTCACTGTGATCCGCATCTTCAGAAAGTATTTGGGGAAGAAAAGATGAAATTTACTGATGTTGCACAGAGGTTATCACACCATTTACTCCCTCCACAACCTATACTCTTAGAGCATAAGATCAAGCTCTCGGGAAATAGTCCGGTTGGAAGTGTTTGTTATGATTTGATGGTTGATATTCCTTTCCCTATTCAGATGGAGTTGTCTTCATTATTGGCTAACGCGGAGAAAAACAAAGAGATTGATGCATGTGATGAAGCTATATGTGGAATCATTAAAAAAATCCACGAACACCGTAGGAGAAGAGCATTCTTTCTTGGTTTCAGTCAATCTCCTGTGGAATTGATTAATGCCTTGATCGAATCTCAAAGCAGGGATCTGAAACTTGCAGCTGGAGAGTCTAGTCGCAATGCTGAAAAAGAGCGTAGATCGGATTTCTTTAACCAACCATGGGTTGAAGATGCTGTTGTTCGTTACTTGAATCGTAAACCAGCCGCAAGAAGTAATGCTCCCGGAACCACATGA 1563 0.4383 MSENNGMPSKGPGGSMSPFGNAGIGFHSTSGNPGFSYSQPQIPAGFQGQYMLSQAQAHAIAQANAQAQFQAQLQAHGLNLNQNFGVPRSSFSALAGNAIAKRLPMKAPTLPVGFSPLKPVELMPGARRKKQKLDEKHLQDRVATVLPESAIYTQLLEFEARVDALYARKKIDIQEALKNPPCIQKTLRIYVFNTFANQTHTFPTRSNAEPPTWTLKIVGRILEDNEEPDQPGGVQKSTESYPKFSSFFKRVTISLDQRLYPDNHIIKWENARSAAPHEGFEVKRKGDKEFSAHIRLEMNHIPEKFKLSPALKEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPHLQKVFGEEKMKFTDVAQRLSHHLLPPQPILLEHKIKLSGNSPVGSVCYDLMVDIPFPIQMELSSLLANAEKNKEIDACDEAICGIIKKIHEHRRRRAFFLGFSQSPVELINALIESQSRDLKLAAGESSRNAEKERRSDFFNQPWVEDAVVRYLNRKPAARSNAPGTT* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1656 520 Gene3D SWIB/MDM2 domain 297 381 IPR036885 -
Lan3g1656 520 MobiDBLite consensus disorder prediction 1 25 - -
Lan3g1656 520 CDD SWIB_like 307 375 - -
Lan3g1656 520 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 113 517 - -
Lan3g1656 520 Pfam SWIB/MDM2 domain 304 375 IPR003121 -
Lan3g1656 520 ProSiteProfiles SWIB/MDM2 domain profile. 300 377 IPR003121 -
Lan3g1656 520 SMART swib_2 301 380 IPR019835 -
Lan3g1656 520 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 113 517 - -
Lan3g1656 520 SUPERFAMILY SWIB/MDM2 domain 295 385 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1656 Lan-Chr3 28819195 28821969 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lan3g1656 SWIB 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1656 K11650 - gmx:100776562 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1656 3 28819195 28821969 Lan5g0203 5 2434220 2437164 PCT
Lan3g1656 3 28819195 28821969 Lan20g1425 20 20922915 20925549 PCT
Lan5g0203 5 2434220 2437164 Lan3g1656 3 28819195 28821969 PCT
Lan20g1425 20 20922915 20925549 Lan3g1656 3 28819195 28821969 PCT