Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1425 ATGTCTGTGAACAATAATAACTCTTCAAAGGGAACTGGGTCCTCTTCATCACCCTTTGGAAATGTTACTTCAATTCCATCAAACCCTGGATTTTCACAATCACAAGGACAAGCTCAAATTGGTGCTGGTTTTCAAGGCCAGTTTCAACTTTCCCAAGCCCATGCCATTGCCCAAGCACAGTCTAAGGCTGCTCATGCCCAAGCAGCGGCTCATGCCCAAGCAGCGGCTCATGCTCAGCTCCAGGCCCATTTGCAGGCCCAAGGATTGACTCTTAATCAGAACCAATCTGGTGGTTTGGGGAATTTAGGGGTGTCGCCGACATTGGGTTCGACGCCTGGCAATGCGAGCGGGAAGCGGATGCCTCTGAAACCGCCTGTGCGGCCTGTTGGATTTTCGCCTATGAATAGCTTCTCGCCTTTGAGACCGATGGAACTCACGCCTGCTGCGTTGACTCGGAGGAAGAAGCAGAAGCTCCCTGAGAAACAGCTTCATGAGAAAGTGGCTGCTATACTGCCTCAGTCTGCTCTGTACACCCAGCTTCTCGAGTTTGAGTCTCGCGTCGATGCTTCGCTTTCTAGAAAGAAGGTTGATATACAGGAAGCGCTCAAGAATCCACCTTGTATTCAGAAAACTCTTCGCATATATGTTTTTAATACCTTTGCTAATCAAGTTCGCACGATTCCTAAGAAGCCAAATGCCGAGCTTCCTACCTGGACGCTTAAGATAGTTGGGAGAATATTGGAAGATGGTGTTGACCCTGATCAGCCAGGAGTAGTCCAGAAGTCATCTGTATTGTATCCCAAGTTCTCAGCTTTCTTCAGAAGAGTAACCATTTCTTTGGATCAGACACTCTATCCTGATAATCACGTGATTATTTGGGAGAATTCCCGATCACCTGCTCCTCATGAAGGTTTTGAAGTTAAGAGGAAAGGAGATGAAGAATTCACAGCGAGTATCCGGTTGGAAATGAATTATGTACCTGAGAAGTTTAAACTATCACAAGCATTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAGTTATTGCTGCAATCTGGCATTATGTGAAGGCCAGGAAATTGCAAAACCCAAATGACCCTTCTTTCTTTCACTGCGATCAGCCTCTTCAGAAAGTATTTGGGGATGAAAAGGTGAAGTTTACTATGGTTTCACAGAAAATATCACATCATTTGTTCCCTCCACAGCCGATATTGTTGGAGCATAAGATTAAACTCTCAGGAAACAGTCCAGCTGGAACTGCTTGTTATGATGTGACGGTTGATATTCCTTTTCCTATTCAGAGGGAGTTGTCTGCATTATTGGCTAGTGTGGAGAAGAATAAAGAGATTGATACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCACGAGCACCGTAGGAGACGGGCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCCTTGATTGAGTCTCAAAGCAAGGATTTGAAATTTGTAGCTGGAGAACCCAGTCGCAATGCTGAAAAAGAAGGCCGATCAGAATTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATATTTAAATCGCAAGCCACCTACAGGAAATGATGCTCCAGGAAGCACATGA 1638 0.4469 MSVNNNNSSKGTGSSSSPFGNVTSIPSNPGFSQSQGQAQIGAGFQGQFQLSQAHAIAQAQSKAAHAQAAAHAQAAAHAQLQAHLQAQGLTLNQNQSGGLGNLGVSPTLGSTPGNASGKRMPLKPPVRPVGFSPMNSFSPLRPMELTPAALTRRKKQKLPEKQLHEKVAAILPQSALYTQLLEFESRVDASLSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQVRTIPKKPNAELPTWTLKIVGRILEDGVDPDQPGVVQKSSVLYPKFSAFFRRVTISLDQTLYPDNHVIIWENSRSPAPHEGFEVKRKGDEEFTASIRLEMNYVPEKFKLSQALTEVLGIEVDTRPRVIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGDEKVKFTMVSQKISHHLFPPQPILLEHKIKLSGNSPAGTACYDVTVDIPFPIQRELSALLASVEKNKEIDTCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKFVAGEPSRNAEKEGRSEFFNQPWVEDAVIRYLNRKPPTGNDAPGST* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1425 545 MobiDBLite consensus disorder prediction 100 127 - -
Lan20g1425 545 CDD SWIB_like 332 400 - -
Lan20g1425 545 SMART swib_2 326 405 IPR019835 -
Lan20g1425 545 Gene3D SWIB/MDM2 domain 322 406 IPR036885 -
Lan20g1425 545 SUPERFAMILY SWIB/MDM2 domain 320 410 IPR036885 -
Lan20g1425 545 Pfam SWIB/MDM2 domain 329 400 IPR003121 -
Lan20g1425 545 MobiDBLite consensus disorder prediction 100 114 - -
Lan20g1425 545 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 92 537 - -
Lan20g1425 545 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 92 537 - -
Lan20g1425 545 MobiDBLite consensus disorder prediction 1 39 - -
Lan20g1425 545 ProSiteProfiles SWIB/MDM2 domain profile. 325 402 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1425 Lan-Chr20 20922915 20925549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lan20g1425 SWIB 6.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1425 K11650 - gmx:100789681 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0203 5 2434220 2437164 Lan20g1425 20 20922915 20925549 LSH
Lan3g1656 3 28819195 28821969 Lan20g1425 20 20922915 20925549 PCT
Lan20g1425 20 20922915 20925549 Lan3g1656 3 28819195 28821969 PCT