Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0938 ATGAAGAGGGATTCAACACTTGTGGTTCTTGTACTTGCATTGTTCTGTTGCAGTACATGGACAGTGTATAGCAGCAACTCGCTTTGCAAACACACAAACTTCGACGAAATTCGAAGGCCTCATAGTGTTAGTATCACAGAATTTGGTGCAGTTGGGGATGGAATTACTCTCAACACAAAAGCATTTCAGAATGCAATCTTCTACTTAAACTCATTCGCAGACAAAGGTGGAGCAAAGCTTTTTGTTCCGGCCGGTCGGTGGCTAACTGGCAGTTTTGATCTCATCAGCCATCTAACTTTGTCCTTGGACAAGGATGCAGTAATTCTTGGATCAACAGATATCGGCGATTGGCCAGTTGTTGATCCTCTACCATCATATGGGCGAGGAAGGGAATTGCCCGGTGGAAGGCATATGAGCCTTATTTTCGGGCGAAATTTGACTGATGTCATCATTACAGGTAATAATGGAACTATCGATGGTCAAGGGAGCATATGGTGGAACAAATTTCGGAACAAAACTTTGGATTATACGCGTCCGCATTTGGTAGAATTGATGAATTCAACAGGAGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAATTCAGAATGTCACCATCCTCGCGCCTCTTGATTCGCCGAACACGGATGGGATCGATCCAGACTCTTCAGATCATGTATGCATTGAAGACTGTTACATAAGCACAGGTGATGATTTGATTGCCATAAAAAGTGGTTGGGATGAGTACGGCATCGCATTCGATCGACCGAGCACAAACATAATCATCCATAGGCTGACAGGGAAAACTGAAACAAGTGCAGGCATAGCAATTGGAAGTGAAATGTCTGGTGGTATATCCGAAGTCCATGCCGAAAACATTCAGTTCCATGATTCATATAATGCTATCAGAATAAAAACATCTCCTGGAAGAGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGTCCTTGGTTAATGTTGATATTGCTATAAGATTCACTGGCTTATATGGTGATCACCCAGATGATTATTATAACCGAAATGCGCTACCTTTAATAGAAAAGATAACAATTGAAGATGTTATAGGACACAATATAAAACATGCTGGTATTATAGAAGGTATAAAAGGTGACAATTTTATCAACATATGTTTATCAAACATTATCCTTAATGTGACATCAAGATATGCATGGAACTGTTCCTATGTTGAAGGGTACTCTGATTTGGTTGTGCCACAAGCTTGTGAGGCTCTTAAGGGAAGAATATTCAGTGATCATTGTTCAGATTGTTACTATTTATCAAAGTGCATACCAAGTTGGAATAAGAGAAAAAGAGAAGGAGAAATTTCAAGTGATGTAAGAAGTTGA 1410 0.3965 MKRDSTLVVLVLALFCCSTWTVYSSNSLCKHTNFDEIRRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTDIGDWPVVDPLPSYGRGRELPGGRHMSLIFGRNLTDVIITGNNGTIDGQGSIWWNKFRNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTIQNVTILAPLDSPNTDGIDPDSSDHVCIEDCYISTGDDLIAIKSGWDEYGIAFDRPSTNIIIHRLTGKTETSAGIAIGSEMSGGISEVHAENIQFHDSYNAIRIKTSPGRGGYVRNIYVSNMSLVNVDIAIRFTGLYGDHPDDYYNRNALPLIEKITIEDVIGHNIKHAGIIEGIKGDNFINICLSNIILNVTSRYAWNCSYVEGYSDLVVPQACEALKGRIFSDHCSDCYYLSKCIPSWNKRKREGEISSDVRS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0938 469 SUPERFAMILY Pectin lyase-like 36 431 IPR011050 -
Lan4g0938 469 PANTHER OS07G0245200 PROTEIN 8 439 - -
Lan4g0938 469 PANTHER PECTIN LYASE-RELATED 8 439 - -
Lan4g0938 469 SMART pbh1 299 320 IPR006626 -
Lan4g0938 469 SMART pbh1 328 349 IPR006626 -
Lan4g0938 469 SMART pbh1 271 293 IPR006626 -
Lan4g0938 469 SMART pbh1 210 236 IPR006626 -
Lan4g0938 469 SMART pbh1 237 269 IPR006626 -
Lan4g0938 469 Pfam Glycosyl hydrolases family 28 139 418 IPR000743 GO:0004650|GO:0005975
Lan4g0938 469 Gene3D - 24 420 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0938 Lan-Chr4 11777818 11781228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0938 1 449 Glycoside Hydrolase AT3G62110 65.342 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0938 - - gmx:100817309 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0938 4 11777818 11781228 Lan2g0246 2 2012819 2016702 LSH
Lan4g0938 4 11777818 11781228 Lan20g0565 20 4325847 4329844 PCT
Lan20g0565 20 4325847 4329844 Lan4g0938 4 11777818 11781228 PCT