Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0246 ATGAGGAGACCTTCAACACTTGTGAATGTGGTCCTGGTATTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAGAAGCGGCTCACTTTGCAAACATACAAACTTCGAGGAAATTCGACGGCCTCATAGTGTCAGTATCACTGAATTTGGAGCAGTAGGGGATGGAGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACTTAAACTCGTTTGCAGATAAAGGAGGAGCAAAGCTTTTTGTCCCGGCTGGCCGATGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGCTGGACAGGGATGCAGTAATTCTTGGATCAACGGACCTCAACGATTGGCCAGTTATTGATCCTTTACCATCATATGGACGAGGAAGGGAGTTGCCGGGTCGAAGACATAAGAGCCTCATTTATGGCGACAATCTGACTGATGTCATCATAACAGGTGACAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAAGAACAAAACATTGGATTATACACGTCCGCATATGGTCGAATTGGCAAATTCAACAGCGGTTCTGATTTCAAATTTAACCGTTTTGAATTCTCCGTTTTGGACCATTCATCCTGTATATTGCAGCCATGTTACGGTTCAGAACGTCACCATCATTTCTCCTCTTAAATCACCAAACACAGATGGGATTGATCCAGACTCTTCAGATGATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATATGATTTCCATAAAAAGTGGTTGGGATGAGTATGGCATTGCATTCGGTCGTCCAAGCAAAAACATTATTATCCATCGACTCACCGGCCAAACTCAAAGCAGTTCAGGGATTGCTATTGGCAGTGAGATGTCTGGTGGTGTATCAGAAGTTTATGCCGAAGATATTCGCATGTTCAATTCGAACAATTCTATCAGAATAAAAACTGCTCCTGGAAGGGGTGGTTATGTCAGAAATATCTATATATCGAATGTGACATTGGTTAATGTTACTACTGCTATTAGGCTTACTGGTTTATATGGTCAACATCCAGATGATGGTTATGACCCGAATGCACGACCCGTAATAGAAAATATTACAATTAAGAATATTATAGGAGATCAAATAAAAAATGCAGGTATTGTACAGGGCATAGAAGGTGACAATTTTGTTAACATATGTCTCTCAAACATTATCCTTCATGTGACATCAAGCTATCCATGGAACTGCTCTAATGTTCAAGGATACTCTGACAATGTTTTGCCAGAAGTTTGTGTGCAACTTAAGGAAAGAATAATCCCTGATCATTCTTCAGAATGTTACCATTTGTCGAATCTCGAGCCGAGATCAAATAACTAA 1380 0.4072 MRRPSTLVNVVLVFALFSCSTWTVWSRSGSLCKHTNFEEIRRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDRDAVILGSTDLNDWPVIDPLPSYGRGRELPGRRHKSLIYGDNLTDVIITGDNGTIDGQGSIWWSMFKNKTLDYTRPHMVELANSTAVLISNLTVLNSPFWTIHPVYCSHVTVQNVTIISPLKSPNTDGIDPDSSDDVCIEDCYISTGDDMISIKSGWDEYGIAFGRPSKNIIIHRLTGQTQSSSGIAIGSEMSGGVSEVYAEDIRMFNSNNSIRIKTAPGRGGYVRNIYISNVTLVNVTTAIRLTGLYGQHPDDGYDPNARPVIENITIKNIIGDQIKNAGIVQGIEGDNFVNICLSNIILHVTSSYPWNCSNVQGYSDNVLPEVCVQLKERIIPDHSSECYHLSNLEPRSNN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0246 459 SMART pbh1 213 239 IPR006626 -
Lan2g0246 459 SMART pbh1 302 323 IPR006626 -
Lan2g0246 459 SMART pbh1 240 272 IPR006626 -
Lan2g0246 459 SMART pbh1 331 352 IPR006626 -
Lan2g0246 459 SMART pbh1 274 296 IPR006626 -
Lan2g0246 459 Pfam Glycosyl hydrolases family 28 141 421 IPR000743 GO:0004650|GO:0005975
Lan2g0246 459 SUPERFAMILY Pectin lyase-like 37 435 IPR011050 -
Lan2g0246 459 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lan2g0246 459 Gene3D - 30 428 IPR012334 -
Lan2g0246 459 PANTHER OS07G0245200 PROTEIN 6 451 - -
Lan2g0246 459 PANTHER PECTIN LYASE-RELATED 6 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0246 Lan-Chr2 2012819 2016702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0246 1 454 Glycoside Hydrolase AT3G62110 66.883 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0246 - - gmx:100782602 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0938 4 11777818 11781228 Lan2g0246 2 2012819 2016702 LSH
Lan2g0246 2 2012819 2016702 Lan20g0565 20 4325847 4329844 PCT
Lan20g0565 20 4325847 4329844 Lan2g0246 2 2012819 2016702 PCT