Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0565 ATGAAGAGACCTTCAACTCTGGTGTATGTGATTCTTTTACTTGCATTGTTCAGTTGTACCCCATGGACAGTGTGGAGCAGCTCACTCTGCCATGAAGTAAACTCAGACGTTGTTCGGCCTCACAGCGTCAGTATTACCGACTTTGGAGCAGTGGGCGATGGGGTCACACTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTTCAGACAAAGGTGGAGCAAAGCTTTTTGTTCCTGCTGGCCAGTGGCTGACAGGAAGTTTCGATCTCATCAGCCATCTAACTTTGTCCTTGGATAAGGATGCAGTAATTCTTGGATCAATGAACACTGATGATTGGCCAGTTGTGGATCCTCTACCATCTTATGGCCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAAAAGCCTCATTTATGGGTGCAATTTAACTGATGTCATCATAACGGGTAATAACGGCACTATAGATGGTCAAGGAAGCATCTGGTGGAGCAGGTTTCAGAACAAAACATTGAACTATACACGCCCCCATTTGGTTGAGTTGATGAATTCAACCGGGATTCGTGTTGCCAACTTAACTTTCAAGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCAATGTTACAGTTCAGAATGTCACAATCCTTGCTCCTCTTAGTTCACCGAACACAGATGGGATTGATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATTTGATTTCCATCAAAAGTGGGTGGGACGAATATGGGATTTCATTTGGTCGTCCCAGTACGAACATTATTATCCACAGGCTCGTCGGGCAAACAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTCCATGCAGAAGATATTCAGATTTTTGATTCACGTAGTGCAATCAGAATAAAAACGTCTCCTGGCAGGGGCGGTTATATAAGAAACATCTATATCGCTAACTTGACCTTGGCTAATGTAGATATTGCTATTAGGTTCAGCGGTTTATACGGAGAACATCCAGATGATGCTTATGACCCAGATGCTCTACCTATAATAGAAAGGATTACTGTCACGGATGTGATTGGGGAAAATGTCAACCGCGCAGGCCTTTTACAGGGTATACAAGGTGACCATTTTGTCAATATCTGCCTATTAAACATCACCCTTAGTGTGAGAAAAAAGGTTCCATGGAACTGCTCTTATGTTAAAGGTTACTCTGACTTGGTGTCTCCGGAAATTTGTGAGCCTCTGAAAGAGAGAATATTCCCTGAGCATTCATCAGACTGTTACTATTTATCAAATCCCTTGAAGAGTTCGAGTAATCGGAATAAGGGTGGTTGGTTGATGTCTTGGTGA 1398 0.4285 MKRPSTLVYVILLLALFSCTPWTVWSSSLCHEVNSDVVRPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLSLDKDAVILGSMNTDDWPVVDPLPSYGRGRELPGGRHKSLIYGCNLTDVIITGNNGTIDGQGSIWWSRFQNKTLNYTRPHLVELMNSTGIRVANLTFKNSPFWTIHPVYCSNVTVQNVTILAPLSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIHRLVGQTTSAGIAIGSEMSGGVSEVHAEDIQIFDSRSAIRIKTSPGRGGYIRNIYIANLTLANVDIAIRFSGLYGEHPDDAYDPDALPIIERITVTDVIGENVNRAGLLQGIQGDHFVNICLLNITLSVRKKVPWNCSYVKGYSDLVSPEICEPLKERIFPEHSSDCYYLSNPLKSSSNRNKGGWLMSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0565 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Lan20g0565 465 PANTHER OS07G0245200 PROTEIN 10 448 - -
Lan20g0565 465 Gene3D - 24 418 IPR012334 -
Lan20g0565 465 PANTHER PECTIN LYASE-RELATED 10 448 - -
Lan20g0565 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lan20g0565 465 SUPERFAMILY Pectin lyase-like 34 430 IPR011050 -
Lan20g0565 465 SMART pbh1 327 348 IPR006626 -
Lan20g0565 465 SMART pbh1 298 319 IPR006626 -
Lan20g0565 465 SMART pbh1 141 194 IPR006626 -
Lan20g0565 465 SMART pbh1 210 236 IPR006626 -
Lan20g0565 465 SMART pbh1 237 269 IPR006626 -
Lan20g0565 465 SMART pbh1 271 292 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0565 Lan-Chr20 4325847 4329844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0565 1 465 Glycoside Hydrolase AT3G62110 68.922 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0565 - - gmx:100786985 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0938 4 11777818 11781228 Lan20g0565 20 4325847 4329844 PCT
Lan2g0246 2 2012819 2016702 Lan20g0565 20 4325847 4329844 PCT
Lan20g0565 20 4325847 4329844 Lan4g0938 4 11777818 11781228 PCT
Lan20g0565 20 4325847 4329844 Lan2g0246 2 2012819 2016702 PCT