Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0930 ATGAAGGTCTTAGGTTCATTGCTATTGGTGACTGTTGCTATGGTGTTAGCCATCACTACTGCATCTGATCCTGATCCTCTTCAAGACTTCTGTGTTGCAAATCTTACCTCTGTGGTTGAAGTGAATGGATTCACATGCAAAAACGCGTCTGAAGTAAATGCAAGTGATTTCTCCTCATTGATACTAGCCAAACCAGGTTCCACAAACAACACCTATGGGTCCCTAGTGACTCGAGCCAATGTTTTGAAAGTGGCAGGACTCAACACTTTAGGTCTCTCTTTATCACGTATTGACTATGCCCCATGTGGCTTAAACCCACCTCACACACACCCACGTGCCACTGAGGTTGTTTTTGTTCTTAAGGGAACACTTGATGTTGGGTTCATAACTGTAGCCAATGTTCTTATATCTAAGACTATTACCAAAGGTGAGATATTTGTGTTCCCTAAAGGATTGGTTCACTTTCAAAAGAATAATGGTCACCACCCAGCTTCAGTTATTGCATCCTTTAATAGCCAATATCCTGGGAAACAATCCATTGCACTTACTTTGTTTACTGCTACGCCACCACTTCCAAACAATGTTTTGAGCAAGGCCTTTCAAGTGAGTACCAATGAGGTTGAGATTATCAAGTCTAACCTTGCACCTAAGAACTAG 657 0.4186 MKVLGSLLLVTVAMVLAITTASDPDPLQDFCVANLTSVVEVNGFTCKNASEVNASDFSSLILAKPGSTNNTYGSLVTRANVLKVAGLNTLGLSLSRIDYAPCGLNPPHTHPRATEVVFVLKGTLDVGFITVANVLISKTITKGEIFVFPKGLVHFQKNNGHHPASVIASFNSQYPGKQSIALTLFTATPPLPNNVLSKAFQVSTNEVEIIKSNLAPKN* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0930 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 8 215 - -
Lan4g0930 218 SMART Cupin_1_3 60 208 IPR006045 -
Lan4g0930 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 215 - -
Lan4g0930 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Lan4g0930 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Lan4g0930 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Lan4g0930 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Lan4g0930 218 SUPERFAMILY RmlC-like cupins 23 214 IPR011051 -
Lan4g0930 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Lan4g0930 218 Pfam Cupin 62 207 IPR006045 -
Lan4g0930 218 CDD cupin_OxOx 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0930 Lan-Chr4 11684703 11690585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0930 8 218 Miscellaneous Gene Families AT3G05930 51.415 3.83e-72 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0930 - - gmx:100302722 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0930 4 11684703 11690585 Lan16g0964 16 16707985 16710541 LSH
Lan4g0930 4 11684703 11690585 Lan20g0584 20 4481163 4481921 PCT
Lan20g0584 20 4481163 4481921 Lan4g0930 4 11684703 11690585 PCT