Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0964 ATGAAGCTCTTAGGTTCATTGCTAATGGTGATTCTTGCTTTGGTGTTAACCATTACCACTGCTTCAGATCCTGATCCTCTTCAAGATATATGTGTAGCAGACCTTACATCTGTGATCAAAGTGAATGGATTCACATGCAAAAGCGCCTCAAACGTAACTGCAAATGATTTTTCATCAAACATACTAGCCAAACCAGGTTCCACAAACAACACCTATGGTTCCTTAGTTACTGGAGCCAATGTTGAAAAAGTTCCAGGACTCAACACTTTAGGTGTCTCTTTATCACGCATTGATTATGCCCCATATGGTTTAAACCCACCACACACTCACCCACGTGCCACTGAAGTTGTTTTTGTTCTAGAAGGAACACTAAATGTTGGGTTCATAACAACATCAAATGTACTCATATCAAAGAACATTACCAAAGGTGAAATCTTTGTGTTTCCAAAAGGGTTAGTTCACTTTCAAAAGAATAATGGTAAAAAAATAGCTTCAGTTATTGCTGCTTTTAATAGTCAATTACCTGGAACACAATCCATTGCTCTTACATTGTTTACTGCAACACCAACAGTTCCTGATAATGTTTTGAGTCAGGCTTTTCAGATTGGTACCAATGAGGTTGAGAAAATCAAGTCTAGTCTTGCACCCAAGAAGTAG 657 0.382 MKLLGSLLMVILALVLTITTASDPDPLQDICVADLTSVIKVNGFTCKSASNVTANDFSSNILAKPGSTNNTYGSLVTGANVEKVPGLNTLGVSLSRIDYAPYGLNPPHTHPRATEVVFVLEGTLNVGFITTSNVLISKNITKGEIFVFPKGLVHFQKNNGKKIASVIAAFNSQLPGTQSIALTLFTATPTVPDNVLSQAFQIGTNEVEKIKSSLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0964 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 215 - -
Lan16g0964 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Lan16g0964 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Lan16g0964 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Lan16g0964 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 7 215 - -
Lan16g0964 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Lan16g0964 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Lan16g0964 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Lan16g0964 218 SMART Cupin_1_3 59 208 IPR006045 -
Lan16g0964 218 Pfam Cupin 62 207 IPR006045 -
Lan16g0964 218 CDD cupin_OxOx 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0964 Lan-Chr16 16707985 16710541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0964 8 218 Miscellaneous Gene Families AT3G05930 55.189 1.47e-80 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0964 - - gmx:100302722 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0930 4 11684703 11690585 Lan16g0964 16 16707985 16710541 LSH
Lan16g0964 16 16707985 16710541 Lan20g0584 20 4481163 4481921 PCT
Lan20g0584 20 4481163 4481921 Lan16g0964 16 16707985 16710541 PCT