Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0584 ATGGGCAAAACAGGTGTGAAAGTGAATGGATTCACATGTAAAGAAGCATCCAAGGTAAATGCCAGTGATTTCTTCTCAAGCATTCTATCCAAACAAGGATCAACCAACAACACCTTAGGCTCCTTGGTGACTGGAGCCAATGTTGAAAAAGTCCCAGGACTTAACACCCTTGGTGTGTCTTTATCAAGGATTGACTATGCACCAGATGGCCTTAACCCACCTCACACACACCCACGTGCAACTGAAGTAGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACTTCCAATGTTCTCATATCTAAGACCATTAACAAGGGTGACATATTTGTGTTCCCAAAGGGTCTTGTTCACTTTCAAAAGAACAATGCCAAGGTAAATGCTTCTGTGATTTCAGCCTTCAACAGTCAACTACCTGGTACACAATCCATTGCTGCTACCTTGTTTGCAGCCACGCCACCTGTTCCGGATCATGTGTTGACCAAGGCATTCCAGGTTGGAACCAAGGAGGTTGACAAAATCAAGTCTAGGCTTGCACCAAAGAAGTAG 558 0.4427 MGKTGVKVNGFTCKEASKVNASDFFSSILSKQGSTNNTLGSLVTGANVEKVPGLNTLGVSLSRIDYAPDGLNPPHTHPRATEVVFVLEGQLDVGFITTSNVLISKTINKGDIFVFPKGLVHFQKNNAKVNASVISAFNSQLPGTQSIAATLFAATPPVPDHVLTKAFQVGTKEVDKIKSRLAPKK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0584 185 CDD cupin_OxOx 2 181 - -
Lan20g0584 185 Pfam Cupin 29 174 IPR006045 -
Lan20g0584 185 SMART Cupin_1_3 26 175 IPR006045 -
Lan20g0584 185 PANTHER GERMIN-LIKE PROTEIN 3 183 - -
Lan20g0584 185 SUPERFAMILY RmlC-like cupins 20 180 IPR011051 -
Lan20g0584 185 Gene3D Jelly Rolls 1 183 IPR014710 -
Lan20g0584 185 ProSitePatterns Germin family signature. 70 83 IPR019780 GO:0030145
Lan20g0584 185 PRINTS Germin signature 75 95 IPR001929 GO:0030145
Lan20g0584 185 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Lan20g0584 185 PRINTS Germin signature 138 153 IPR001929 GO:0030145
Lan20g0584 185 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0584 Lan-Chr20 4481163 4481921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0584 5 185 Miscellaneous Gene Families AT3G05930 60.440 9.49e-79 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0584 - - gmx:100817475 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0930 4 11684703 11690585 Lan20g0584 20 4481163 4481921 PCT
Lan16g0964 16 16707985 16710541 Lan20g0584 20 4481163 4481921 PCT
Lan20g0584 20 4481163 4481921 Lan4g0930 4 11684703 11690585 PCT
Lan20g0584 20 4481163 4481921 Lan16g0964 16 16707985 16710541 PCT