Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0917 ATGGGGACTGAAAATCCCAGTCGTCCGAGCTTCCCTGCAAGACCTGCTTCCTCACCTTTTGCTGCTGCACAGACTATGACACCTTTTTCATCAACCGGTCCGGCAGCTGGATCAGAGCCTACTTCTTTCCGACCTACTCCTCCTGCTCCTCCTCAGACGTCTATGCCGTTTTCATTATCAGGAGGACCTGTGGTGAGACCAGGGGTACCGAGTTTTAGGCCTGGACCACCTGGCAGGTTCAATGACCCATCGGCATCTCCTCCTCCTTTTCCCCCAACATCCAATGTCCTCCCACCTGGTGGACCTTTCCAGCGTTATCCAGCACCACAGTTTTCCACAACATCACCACAAGCACCTCTGCCACATGCTCCACCCACGATGGGGCAACCATCATTTCAACATTCTGCAATTCAAGCACCATCTTTTCCAGCATCACTTCCTCCTCAGTCGCAGACACCTTTTGTTCCAATGGGGTCTCCCCCACCAAGTGCCACTCCTGCACCTTTGGGTTCGAATGGTCCTCCTCCCGTGTATCAGCCATCTTTTCCAGGATATGCCCGTCCTCAGGCTGCTCCAGAAATGCAAGCTCCTCTACCTTTGCAATCCTCTTTCCCTGCTAATCAAGGAAATTATGGACCTGTTCGGCCTGCAGCATCTTCTCCTTTTCTACCTCATCAAAGACAAGGAGGCTATGTTCCATCGCCCTCAGTGGGTGCTCCACTAGGCATGCATCCAATGCAGCAGCCAGGATCTGGACCCCCTATTGGTGCCGTTCAGGGATTGGCTGAAGACTTCAGCTCGCTCACGATGCAAACTCGTCCTGGAACAATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCATTGGATGGTGATGTGGAACCAAACAATTTAGTTGACATGTATACTGCAAACTGCCATCCTAGATTTCTTCGACTCACAACCAATGCTGTTCCTAGCTCACAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAGTTGTATGTCCACTTGCAGAACCTCCTGAAGGGGAAGAGGTACCAATTGTTAGTTTTGCACCAGCTAGTGTTGTACGTTGTAGAAGATGTCGTACATATATGAATCCATTTATGACATTTACTGAAGGTGGAAGGAAGTACCGCTGCAACGTCTGCACCTTGCTTAATGATGTTCCTAGTGAATATTATGCCCAATTAGATGCCACTGGTAAAAGAGTTGATTTGAATCAACGACCTGAGCTGACAAAGGGTACTGTAGAATTTGTTGCTCCTGCTGAATATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCCAAACAATAAAGTCATGCTTAGATGAGCTACCTGGCTTTCCACGAACACAAATAGGGTTTGCAACTTTTGATAGCACAATACATTTCTATAATATGAAGTCATCTTTGACACAGCCACAGATGTTGGTGGTCTCAGATTTGGATGACATATTTATTCCACTACCAGACGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGACACCTTCCTAGATAGTTTACCATCCATGTTTCAGGACAATGTTAATTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAGAACTCACTCCCATCTCTTGGTATTGGCCGCTTGAAATTACGTGGAGATGATTCTCGTGCTTATGGGACAGATAAAGAGCATGGGTTGAGATTGCCCGAGGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAATACCAAATCTCGGCAAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGCACTCTGGCAAAGTATACTGCCGGTCAAGTGTATTACTATCAAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGATATGAGTTAAGAAGAGATCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGCATTAGATGTGCAAAAGGTGTACGCTTCACAACTTATCATGGGAACTTTATGCTAAGGTCCACTGATCTGTTAGCACTTCCAGCTGTAGATTCTGATAAAGCCTTTGCCATGCAGTTATCTCTTGAAGAGACACTATTGACCACTCAGACACAGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCCTTGCTGATACGGGTGCAATTGTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACGCTGTCCCAAAAACTTGAGGATGCACGGAGTGCAGTGCAACTAAGAATTGTGAAAGCCCTCAAAGAATATCGAAATCTTTATGCTGTGCAACACCGCTTGGCCAACAGAATGATATATCCTGAGTCTTTAAAGTTCCTACCACTGTATGGATTGGCTCTTTGTAGATCAATGCCTCTCCGTGGAGGGTATGGAGATGTTTCATTGGATGAACGATGTGCAGCAGGACACACAATGATGACTGTACCAATAAAAACACTGTTGAAACTTCTCTATCCTAGCTTGATTCGAGTTGATGAATATCTCCTTAAGGCATCTGTTCTGACTGATGAGTTGAAAAGTATTGAGAGAAGGACACCTTTGACTGGTGAGAGCTTGGATTCTAGGGGTCTTTATATATATGATGATGGCTTCCGGTTCATTATATGGTTTGGTAGGGTGATTTCACCTGACATAGCTAAGAATTTACTCGGGGCAGACTTCGCAGCAGAATTATCGAAGGCTACTCTCAATGAGCATGATAATGAAATGTCAAGGAGGTTGATGAGGGTACTCGAGAAATTAAGAAGTACTGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAACCCAGAGAAGGGTTCCTTCTTCTTGCAAACCTTCTTGAGGACCAGATGGGTGGTAACAGTGGTTATGCTGATTGGATGCTACAGATATCGCGACAAGTGCAGCAATCCTAA 3090 0.4518 MGTENPSRPSFPARPASSPFAAAQTMTPFSSTGPAAGSEPTSFRPTPPAPPQTSMPFSLSGGPVVRPGVPSFRPGPPGRFNDPSASPPPFPPTSNVLPPGGPFQRYPAPQFSTTSPQAPLPHAPPTMGQPSFQHSAIQAPSFPASLPPQSQTPFVPMGSPPPSATPAPLGSNGPPPVYQPSFPGYARPQAAPEMQAPLPLQSSFPANQGNYGPVRPAASSPFLPHQRQGGYVPSPSVGAPLGMHPMQQPGSGPPIGAVQGLAEDFSSLTMQTRPGTMDPLFDAKELPRPLDGDVEPNNLVDMYTANCHPRFLRLTTNAVPSSQSLASRWHLPLGAVVCPLAEPPEGEEVPIVSFAPASVVRCRRCRTYMNPFMTFTEGGRKYRCNVCTLLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVDTFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGIGRLKLRGDDSRAYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYQAFQSAIHGEKLRYELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDSDKAFAMQLSLEETLLTTQTQYFQVALLYTASCGERRIRVHTMAVPVVTDLGEMYRLADTGAIVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLPLYGLALCRSMPLRGGYGDVSLDERCAAGHTMMTVPIKTLLKLLYPSLIRVDEYLLKASVLTDELKSIERRTPLTGESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLNEHDNEMSRRLMRVLEKLRSTDRAYYQLCHLVRQGEQPREGFLLLANLLEDQMGGNSGYADWMLQISRQVQQS* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0917 1029 Pfam Sec23/Sec24 trunk domain 434 670 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lan4g0917 1029 MobiDBLite consensus disorder prediction 1 222 - -
Lan4g0917 1029 MobiDBLite consensus disorder prediction 69 105 - -
Lan4g0917 1029 Gene3D Sec23/Sec24 helical domain 760 1026 - -
Lan4g0917 1029 SUPERFAMILY beta-sandwich domain of Sec23/24 192 769 - -
Lan4g0917 1029 Pfam Sec23/Sec24 zinc finger 360 397 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan4g0917 1029 Gene3D von Willebrand factor, type A domain 436 673 IPR036465 -
Lan4g0917 1029 PANTHER OS04G0129500 PROTEIN 30 1028 - -
Lan4g0917 1029 MobiDBLite consensus disorder prediction 20 39 - -
Lan4g0917 1029 CDD Sec24-like 434 675 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lan4g0917 1029 Gene3D - 307 759 - -
Lan4g0917 1029 SUPERFAMILY Helical domain of Sec23/24 771 878 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lan4g0917 1029 SUPERFAMILY Zn-finger domain of Sec23/24 351 433 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan4g0917 1029 MobiDBLite consensus disorder prediction 128 145 - -
Lan4g0917 1029 Coils Coil 884 904 - -
Lan4g0917 1029 Gene3D - 305 418 - -
Lan4g0917 1029 SUPERFAMILY vWA-like 434 673 IPR036465 -
Lan4g0917 1029 Pfam Sec23/Sec24 helical domain 771 874 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lan4g0917 1029 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 887 1028 IPR036180 -
Lan4g0917 1029 Gene3D Severin 879 1007 IPR029006 -
Lan4g0917 1029 MobiDBLite consensus disorder prediction 146 182 - -
Lan4g0917 1029 Pfam Sec23/Sec24 beta-sandwich domain 676 760 IPR012990 -
Lan4g0917 1029 Pfam Gelsolin repeat 906 962 IPR007123 -
Lan4g0917 1029 PANTHER SEC24-RELATED PROTEIN 30 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0917 Lan-Chr4 11179607 11190510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0917 K14007 - gmx:100791083 1683.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0917 4 11179607 11190510 Lan16g0972 16 16788062 16799181 LSH
Lan4g0917 4 11179607 11190510 Lan20g0600 20 4693304 4700641 PCT
Lan20g0600 20 4693304 4700641 Lan4g0917 4 11179607 11190510 PCT