Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0600 ATGGTAACTGAAAACCCCGATCGTCCAACTTTCCCTTTAAGACCACACACTGTCACACCTTTTACACCAACTGGATCACAACCCCCTCCTCTCCGCCCCACTCCTCCACTCTCCTCCGCAACCGTATTCCCTTTTAGACCTCCGACGACGACTACTTTTAATGTCCCTCCCACTCGTGGACCTTTCCACCGTTTTCCAACTCCGCCGCAATTTCCATCCACCGCTCAAACACAACCACCGCCACTTGGTCCACCCTTCATGCAGCCATCAATTCAACAACCTCAGCCACAAACACCTTTTGTTTCAGTGGGTCCAACTGTTCCCCCTCCCGTGTTTCAACCATCTTTTCCTGGATATGCTACTACACAAACTGGTGCAGAAATGCATGCTCCACCTGTGCATTCCTCTCTAGGGGTTTATAGACCTGTTCCAGCGTCTTCACCGTTTTTATCTCGTCAAGGAGGTTATGTTCCGCCGCCACCAGTGGCAGCTCCTTCAGTCATCCAGCCGCAAATGCAACAGCCAGGATATGGGCAGCCTATACGTGCTGTTCAGGGATTGACAGAAGACTTCAGTTCATTGTCAATTCAAAATCGCCCTGGTTTGGTGGATCCATCGGTTGACCCTAATGAATTGCCAAGGCCATTGGATGGTGATGTGGAGTCGGATTCGTTGGCTGAGACGTTTCCCATGAATTGCAATCCCAGGTATATGCGATTTACGACCAATGCAATACCGAGCTCCCAGTCCTTAGCTTCTAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCAGTACCTCCTGAAGGGGATGAGGTGACTGTAGTTAATCTTTCTCCGGGTGGTGTAGTACGCTGTAGGAGATGTCGTACATATATCAATCCATATATGACATTTACAGAAGGCGGAAGGAAGTACCGCTGCAACATATGTGCCTTGCTTAATGAAGTTCCTAGTGAATATTATGCACAATTAGATGCCACTGGCAAAAGGGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACCGTGGAGTTTGTTGCCTCAGCTGAATATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGTAGCTCAAACAATCAGGTCATGCTTAGACGAGCTGCCTGGTTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAATATGAAGTCCTCCTTGACTCAGCCTCAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTCCTTGTCAACTTATCAGAATCAAGAAATGTGGTGGAAACCTTTCTAGATAGTCTACCATCCATGTTCAAAGACAATGTGAATTTCGAATCTGCTTTTGGTCCTGCACTTAAGGCTGCATTTATGATTATGAGTCAACTTGGAGGCAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCGCTTGAAATTACGTGGAGACGATTCTCGCATTTATGGCACCGATAAAGAACATGTGTTAAGATTGGCAGAAGATCCATTTTACAAGCAAATGGCTGCTGAATTTTCTAAATACCAGATCTCAGTCGATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGAACACTGGCTAAGTATACCGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAATCATTCATGGGGAGAAACTCAGAAGTGAATTAAGGAGAGACCTTACCAGAGAAACTGCCTGGGAAGCTGTAATGCGAATTCGATGTGCTACAGGTGTCCGTTTGACAACTTATCATGGAAACTATATGCTAAGATCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCTCTTGATGAAGCATTGTTGACAACTCAGACAATGTATTTCCAAGTTGTATTGCTATATACTGCATCATGCGGAGAAAGGCGTATCAGAATACACTCAGCAGCAGTTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCCTGGCTGATACTGGTGCAATTGCATCTTTGTTTAGTAGGATAGCAATTGAGAAAGCATTGTCCCATAAACTGGAAGAAGCACGAGGTGGTGTGCAACTAAGAATCGTGAAAGCCCTCAGAGAATATAGAAATCTGCATGCAGTGCAACATCGCTTGGCAAACAGAATGATATATCCTGATTCATTGAAGTTCCTACCCTTGTATGGATTAGCTCTCTGTAGATCAAAACCTCTCCGTGTAGGGCATGGAGATGTTCCACTGGATGAGCAATGTGCAGTTGGACATACGATGATGACTCTACCAATAAAAAGGCTGTTGAAACTTCTATATCCTAGTTTAATTCGACTTGATGAACATCTTCTGAGGGCTGGTGACTTGAAAAGCATTGATAGAAGATTACCTTTGAGTAGGGAGAGCTTGGATTCTAAGGGCCTTTATCTGTATGATGATGGCTTTGGGTTCACTATATGGTTTGGTAGAGTGATTCCACCTGATATAGCTAAAAACTTACTTGGAACAGACTTCGCAGCAGAGTTATCTAAGGTTTCTCTTAACGAGCAAAATAACGAAATGTCAAAGGAACTGATGAAGGTACTTGTGAAATTCAGAAATACTGACCAAGCATATTACCAGCTGTCTCACCTTGTGAGACAAGGTGAACAACCCAGAGAAGGATTCCTTCTTGCAAACCTCGTTGAGGACCAGATGGGTGGTAATAGTGGATATGCTGATTGGATGGCAAAGATTTCCCGACAAGTGCAGCAATCATGA 2853 0.4416 MVTENPDRPTFPLRPHTVTPFTPTGSQPPPLRPTPPLSSATVFPFRPPTTTTFNVPPTRGPFHRFPTPPQFPSTAQTQPPPLGPPFMQPSIQQPQPQTPFVSVGPTVPPPVFQPSFPGYATTQTGAEMHAPPVHSSLGVYRPVPASSPFLSRQGGYVPPPPVAAPSVIQPQMQQPGYGQPIRAVQGLTEDFSSLSIQNRPGLVDPSVDPNELPRPLDGDVESDSLAETFPMNCNPRYMRFTTNAIPSSQSLASRWHLPLGAVVCPLAVPPEGDEVTVVNLSPGGVVRCRRCRTYINPYMTFTEGGRKYRCNICALLNEVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVASAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIRSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRNVVETFLDSLPSMFKDNVNFESAFGPALKAAFMIMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRIYGTDKEHVLRLAEDPFYKQMAAEFSKYQISVDVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSIIHGEKLRSELRRDLTRETAWEAVMRIRCATGVRLTTYHGNYMLRSTDLLALPAVDCDKAFAMQLSLDEALLTTQTMYFQVVLLYTASCGERRIRIHSAAVPVVTDLGEMYRLADTGAIASLFSRIAIEKALSHKLEEARGGVQLRIVKALREYRNLHAVQHRLANRMIYPDSLKFLPLYGLALCRSKPLRVGHGDVPLDEQCAVGHTMMTLPIKRLLKLLYPSLIRLDEHLLRAGDLKSIDRRLPLSRESLDSKGLYLYDDGFGFTIWFGRVIPPDIAKNLLGTDFAAELSKVSLNEQNNEMSKELMKVLVKFRNTDQAYYQLSHLVRQGEQPREGFLLANLVEDQMGGNSGYADWMAKISRQVQQS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0600 950 Pfam Sec23/Sec24 beta-sandwich domain 602 686 IPR012990 -
Lan20g0600 950 Gene3D Sec23/Sec24 helical domain 686 947 - -
Lan20g0600 950 SUPERFAMILY beta-sandwich domain of Sec23/24 87 695 - -
Lan20g0600 950 PANTHER OS04G0129500 PROTEIN 20 949 - -
Lan20g0600 950 SUPERFAMILY vWA-like 360 599 IPR036465 -
Lan20g0600 950 Pfam Sec23/Sec24 zinc finger 286 323 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan20g0600 950 Gene3D - 233 685 - -
Lan20g0600 950 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 815 949 IPR036180 -
Lan20g0600 950 Pfam Sec23/Sec24 trunk domain 360 596 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lan20g0600 950 MobiDBLite consensus disorder prediction 22 42 - -
Lan20g0600 950 Pfam Sec23/Sec24 helical domain 697 800 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lan20g0600 950 SUPERFAMILY Helical domain of Sec23/24 697 804 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lan20g0600 950 MobiDBLite consensus disorder prediction 61 86 - -
Lan20g0600 950 SUPERFAMILY Zn-finger domain of Sec23/24 279 359 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan20g0600 950 MobiDBLite consensus disorder prediction 43 57 - -
Lan20g0600 950 PANTHER SEC24-RELATED PROTEIN 20 949 - -
Lan20g0600 950 MobiDBLite consensus disorder prediction 1 86 - -
Lan20g0600 950 Gene3D von Willebrand factor, type A domain 362 599 IPR036465 -
Lan20g0600 950 Gene3D Severin 805 928 IPR029006 -
Lan20g0600 950 CDD Sec24-like 360 601 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lan20g0600 950 Gene3D - 232 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0600 Lan-Chr20 4693304 4700641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0600 K14007 - gmx:100791083 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0917 4 11179607 11190510 Lan20g0600 20 4693304 4700641 PCT
Lan16g0972 16 16788062 16799181 Lan20g0600 20 4693304 4700641 PCT
Lan20g0600 20 4693304 4700641 Lan4g0917 4 11179607 11190510 PCT
Lan20g0600 20 4693304 4700641 Lan16g0972 16 16788062 16799181 PCT