Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0972 ATGGGGACAGAAAATCCCGGTCGTTCGAGCTTCCCTGCAAGACCTGCTTCCTCACCTTTTGCTGCTGCACAGACTATGACACCTTTTTCGTCCACCGGTCCAGCATCTGGATCAGAACCTACTTCTTTCCGACCTACTCCTCCTGCTCCTCCTCAGACCTCTACGCCATTTTCATTATCAGGAGGACCTATGGTGAGACCAGGGTTACCCAGTTTTAGACCTGGACCGCCGGGCAGGTTTAATGACCCATCAGTGCCTCCTCCTCCTCCACCAACATCCAATGTGTCACCACCTGGTGGGCCTTTCCAGCATTATCCAGGACAGCAGTTTTCTACAACAGCACCACAAGCACCTCCACCACGTGCTTCATCCATCATAGGGCAACCATCATTCCAACATCCTGTAAATCAAGCGCCGGCTTTTCCAGCATCACTTCCTCCTCAGTCACAGGCACCTTTTGTTCCAATGGGGTCTCCCCCACCAGGTGCTACTCCTGCGCCTTTGGGTTCAAATGGTCCTCCTCCCGTGTATCAGCCATCTTTTCCAGGATATGCCCGTCAGCAGCCTGGTACAGAAATGCAAGCTCCTCCACCTATGCATTCCTCGTTCCCTGCTAATCAAGGAAATTATGGATCTGTTCCGCCCACGGCATCTTCTCCATTTCTACCTCATCAAGGACAAGGAGGCTATGTTCCATCTCCTCCAATGGCTGCTCCACTAGGCATCCATCCAGCACAGCAGCTAGGATCTGGACCCCCTATCGGTTCCACTCAGGGCTTGGCTGAAGTCTTCAGTTCACTCACAATGCAAACTCGTCCTGGGACGATGGATACATTATTTGATGCTAAAGAACTTCCAAGGCCATTGGATGGTGATGTAGAACCAAACAATCTAGCCGACATGTATACTGCAAACTGTCATCCCAGATTTCTACGACTCACAACCAATGCTATTCCTAGCTCCCAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAGTTGTATGCCCACTTGCAGAACCTCCTGAAGGGGAAGAGATACCTATAGTTAGTTTTGCACCAGCTAGTGTTGTACGCTGTAGAAGATGCCGTACATATGTGAATCCATATATGACATTTACTGAAGCTGGAAGGAAGTACCGCTGCAATGTCTGCACCTTGCTTAATGATGTCCCTAGTGAATATTATGCGCAATTAGACGCCACTGGTAAAAGAGTTGATTTGAATCAACGACCTGAGCTGACAAAGGGTACTGTAGAATTTGTTGCCCCTGCTGAATATATGGTGCGACCTCCTATGCCCCCAGTATATTTCTTCCTCATCGATGTTTCTATATCTGCAGTTAGAAGTGGCATGATTGAGGTCGTGGCCCAAACAATAAAGTCATGCTTAGACGAGCTGCCTGGCTTTCCAAGAACTCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTCTACAATATGAAGTCATCTTTGACACAGCCGCAGATGTTGGTGGTCTCAGATTTGGATGACATATTTATTCCGCTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAAACTTCCTAGATAGTTTACCATCTATGTTCCAGGACAATGTTAATTTGGAATCAGCTTTCGGTCCTGCTCTTAAAGCTGCATTTATGGTTATGAGTCAACTGGGAGGAAAATTGTTGATTTTTCAAAACTCACTGCCATCTCTTGGTATTGGCCGCTTGAAATTACGTGGAGACGATTCTCGTGTTTATGGTACAGATAAAGAGCATGGGTTGAGATTGCCGGAGGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAATACCAAATCTCAGCAAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCGTCCTTAGGAACTCTGGCAAAGTATACTGCCGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGATATGAGTTAAGAAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGCATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCCGTAGATTCTGATAAAGCATTCGCCATGCAGTTATCTCTTGAAGAGACACTGTTGACCACTCAGACACAATATTTCCAAGTTGCATTGCTATATACTGCATCTTGCGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTTCCAGTAGTTACAGACTTGGGAGAGATGTATCGTCTGGCTGATACTGGTGCAATTGTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACACTGTCCCAAAAACTTGAAGATGCACGGAGTGCGGTGCAACTAAGAATTGTGAAAGCCCTCAAAGAATATAGAAACCTGTATGCTGTGCAACACCGCTTGGGCAACAGGATGATATATCCCGAGTCTTTAAAGTTCCTACCACTGTATGGACTAGCTCTCTGTAGATCAACGCCTCTCCGTGGAGGGTATGGAGATGCTCCAGTGGATGAACGATGTGCAGCAGGACACACAATGATGACTGTACCAATAAAAACACTGTTAAAACTTCTCTATCCTAGCTTGATTCGAGTTGATGAATATCTCCTGAAGGCATCTGTACAGGCTGATGACTTGAAAAGTATTGAGAGAAGGATACCTTTGAGTGGGGAGAACTTGGATTCTAGGGGTCTTTATATATTTGATGATGGCTTCCGGTTCATCATATGGTTTGGAAGGGTGATTTCACCTGATATAGCTAAGAAGTTACTCGGGGCAGACTTTGCCGCAGAATTATCAAAGGCTACTTTGAGTGAGCATGATAATGAAATGTCAAGGAGGCTGATAACGGTACTCGAGAAATTAAGAAGCTCTGATCGTGCATATTACCAGTTGTCCCACCTTGTGAGGCAAGGTGAACAACCCAGAGAAGGATTCCTTCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGATTGGATGATACAGATATCACGACAAGTGCAGCAATCCTAA 3087 0.4548 MGTENPGRSSFPARPASSPFAAAQTMTPFSSTGPASGSEPTSFRPTPPAPPQTSTPFSLSGGPMVRPGLPSFRPGPPGRFNDPSVPPPPPPTSNVSPPGGPFQHYPGQQFSTTAPQAPPPRASSIIGQPSFQHPVNQAPAFPASLPPQSQAPFVPMGSPPPGATPAPLGSNGPPPVYQPSFPGYARQQPGTEMQAPPPMHSSFPANQGNYGSVPPTASSPFLPHQGQGGYVPSPPMAAPLGIHPAQQLGSGPPIGSTQGLAEVFSSLTMQTRPGTMDTLFDAKELPRPLDGDVEPNNLADMYTANCHPRFLRLTTNAIPSSQSLASRWHLPLGAVVCPLAEPPEGEEIPIVSFAPASVVRCRRCRTYVNPYMTFTEAGRKYRCNVCTLLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVENFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGIGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRYELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDSDKAFAMQLSLEETLLTTQTQYFQVALLYTASCGERRIRVHTMAVPVVTDLGEMYRLADTGAIVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLGNRMIYPESLKFLPLYGLALCRSTPLRGGYGDAPVDERCAAGHTMMTVPIKTLLKLLYPSLIRVDEYLLKASVQADDLKSIERRIPLSGENLDSRGLYIFDDGFRFIIWFGRVISPDIAKKLLGADFAAELSKATLSEHDNEMSRRLITVLEKLRSSDRAYYQLSHLVRQGEQPREGFLLLANLVEDQMGGNSGYADWMIQISRQVQQS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0972 1028 Pfam Sec23/Sec24 beta-sandwich domain 675 759 IPR012990 -
Lan16g0972 1028 PANTHER SEC24-RELATED PROTEIN 30 1027 - -
Lan16g0972 1028 Pfam Gelsolin repeat 904 956 IPR007123 -
Lan16g0972 1028 Pfam Sec23/Sec24 trunk domain 433 669 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lan16g0972 1028 Gene3D - 306 758 - -
Lan16g0972 1028 Gene3D von Willebrand factor, type A domain 435 672 IPR036465 -
Lan16g0972 1028 Gene3D Severin 878 1006 IPR029006 -
Lan16g0972 1028 MobiDBLite consensus disorder prediction 1 171 - -
Lan16g0972 1028 Pfam Sec23/Sec24 zinc finger 359 396 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan16g0972 1028 Pfam Sec23/Sec24 helical domain 770 873 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lan16g0972 1028 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 887 1027 IPR036180 -
Lan16g0972 1028 SUPERFAMILY vWA-like 433 672 IPR036465 -
Lan16g0972 1028 MobiDBLite consensus disorder prediction 105 137 - -
Lan16g0972 1028 Gene3D - 304 417 - -
Lan16g0972 1028 SUPERFAMILY beta-sandwich domain of Sec23/24 156 768 - -
Lan16g0972 1028 SUPERFAMILY Helical domain of Sec23/24 770 877 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lan16g0972 1028 PANTHER OS04G0129500 PROTEIN 30 1027 - -
Lan16g0972 1028 CDD Sec24-like 433 674 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lan16g0972 1028 SUPERFAMILY Zn-finger domain of Sec23/24 352 432 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan16g0972 1028 MobiDBLite consensus disorder prediction 69 97 - -
Lan16g0972 1028 Gene3D Sec23/Sec24 helical domain 759 1025 - -
Lan16g0972 1028 MobiDBLite consensus disorder prediction 20 40 - -
Lan16g0972 1028 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0972 Lan-Chr16 16788062 16799181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0972 K14007 - gmx:100791083 1695.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0917 4 11179607 11190510 Lan16g0972 16 16788062 16799181 LSH
Lan16g0972 16 16788062 16799181 Lan20g0600 20 4693304 4700641 PCT
Lan20g0600 20 4693304 4700641 Lan16g0972 16 16788062 16799181 PCT