Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0651 ATGGCTACTTCAAAGATAGTTGGTGTTATTATTTTGTGCTTTGCACTGGCCTGCTATAAAGGTCAAAATGTAACTAAGGATGCCCTAGCTCCTGCTGAGAAAATTGTTAATGTTATGAGTTTTGGAGCCAAACCTGATGGCAATTTTGACAGCACTCAGGCTTTCATGAATGCATGGAGAATAGCATGCAAGTCTCCAGGGCAAAACAAGCTTCTGATCCCTCAAGGAAGGTTCTTAGTTTCTTCAATGTATTTTGCTGGGCCATGCATGGCTCCACTTCCCATAACAGTTCAAGTTGTAGGAACGGTTTTGGCCACCACAGATATAAGTGACTATGAGAATGTTGAATGGCTCATGTTTGAGGACATTGATGGCTTAAATCTTATTGGTGGAGGTACTTTTGATGGTCAGGGTCATAATTCTTGGTCTCGGGTTGTTGACTGCGAAAAAACCCCTTCTACTTGCATCAGGAACCCTAGCAGTCTTTTTTTCAACAAAGTCACGAATGGAGTTATAATGGACATAAAATCCCTTAACTCCAAGGGCTTTCATGTATTTGTCACAAACTGTGCAAACATTAGACTCATAGGACTTCATATCACTGCACCAAGTACCAGCCCCAACACTGATGGCATTCATGTTAGTCACTCCACCCATGTCAGAATATTCAGAAGTGTAATTGGAACTGGAGATGATTGTGTCTCTATAATTCAAGGGGTCAAGAATGTTACCATTGAGAGAGTTGATTGTGGTCCAGGACATGGTATTAGTATTGGTAGTCTTGGAAAGTATGAGCATGAGCTAGAGGTGAGAGAGGTTCGTGTATTGAATTGCACATTTGTTGGGACAGATAATGGCCTCAGAATCAAAACATGGCCAGATAGGTATCCAGGTGCTGCATCAAATATCACTTTCCATGACATTACCATGCAAAGGGTTAGAAATCCTATCATCATTGACCAAGAGTATCAATGTTCTCCTGCAAACTGCCAAAAGAAGCCATCACTTGTAAAGATCAGAGACATTGTTTTTTCAAATGTAAGGGGAACCACATCTTCACAAATTGCAGTGGATTTAAGGTGTAGCAAGTTGTTTCCATGCCAAAACGTTCATATCAGTAACATAAACCTGAACAGTGCATCTTTTCCTATAAGATCTAGATGTGCCAACATTAAACCTATATATAGCGGTGTGCAACATCCACCAGCTTGTTGA 1215 0.4074 MATSKIVGVIILCFALACYKGQNVTKDALAPAEKIVNVMSFGAKPDGNFDSTQAFMNAWRIACKSPGQNKLLIPQGRFLVSSMYFAGPCMAPLPITVQVVGTVLATTDISDYENVEWLMFEDIDGLNLIGGGTFDGQGHNSWSRVVDCEKTPSTCIRNPSSLFFNKVTNGVIMDIKSLNSKGFHVFVTNCANIRLIGLHITAPSTSPNTDGIHVSHSTHVRIFRSVIGTGDDCVSIIQGVKNVTIERVDCGPGHGISIGSLGKYEHELEVREVRVLNCTFVGTDNGLRIKTWPDRYPGAASNITFHDITMQRVRNPIIIDQEYQCSPANCQKKPSLVKIRDIVFSNVRGTTSSQIAVDLRCSKLFPCQNVHISNINLNSASFPIRSRCANIKPIYSGVQHPPAC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0651 404 SMART pbh1 270 291 IPR006626 -
Lan4g0651 404 SMART pbh1 240 260 IPR006626 -
Lan4g0651 404 SMART pbh1 300 321 IPR006626 -
Lan4g0651 404 SMART pbh1 190 216 IPR006626 -
Lan4g0651 404 SMART pbh1 367 388 IPR006626 -
Lan4g0651 404 SMART pbh1 217 238 IPR006626 -
Lan4g0651 404 SUPERFAMILY Pectin lyase-like 29 404 IPR011050 -
Lan4g0651 404 Pfam Glycosyl hydrolases family 28 63 392 IPR000743 GO:0004650|GO:0005975
Lan4g0651 404 PANTHER - 2 404 - -
Lan4g0651 404 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lan4g0651 404 Gene3D - 20 402 IPR012334 -
Lan4g0651 404 PANTHER POLYGALACTURONASE 2 404 - -
Lan4g0651 404 ProSitePatterns Polygalacturonase active site. 247 260 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0651 Lan-Chr4 9090100 9094698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0651 50 404 Glycoside Hydrolase AT3G07820 46.240 1.03e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0651 K01213 - gmx:106796220 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0651 4 9090100 9094698 Lan19g0879 19 16260908 16264340 LSH
Lan12g0874 12 15826333 15828543 Lan4g0651 4 9090100 9094698 PCT
Lan4g0651 4 9090100 9094698 Lan12g0874 12 15826333 15828543 PCT