Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0879 ATGGCCACTGCAAAGAGAGTTGAAATTGTTATTTTGTGCTTTGCACTGGCCTGTTGTTATGTGAATGCTGGTCCAAGAGTAAGGCCAATTGCTGGGCCTGATATCTATAAAGGTCAGAATGTAGCTAAGGATTCCCTTGTTCCTGGAGAGAAAATTGTTAATGTCATGAACTTTGGAGCCAAACCTGATGGCGAGTTTGATTGCACTCAGGCTTTCATGGACGCATGGAGAGCAACATGCAAGTCCCCAGGGCAAAACAGGCTTCTAATACCACAAGGAAGGTTCTTGGTTTCATCAATGTTTTTTGCTGGGCCATGCATGAGTCCAAAGCCAATAACAATCCAAGTTGTAGGAACAGTTCTAGCTACAACAGATATAAGTGAGTATGAAAATGGAGAATGGCTCATGTTTGAGGACATTGCTGGCCTTAAACTTATTGGTGGAGGTACTTTTGATGGCCAGGGTCAAGATTCTTGGTCACAAACTGAGGACTGTGAAAAATCCGGTTCTACATGCATCAGAAACCCTAGTAGCCTTTACTTCAACAAGGTCACTAATGGAGTTATACAAAACATCAAATCCGTTAACTCCAAAGGGTTTCATGTATTTGTCACAAACTGTGCAAACATGAGACTTAGAAGAATTGGGATCACTGCACCAGATACAAGCCCCAACACTGATGGAATTCACATAAGCCACTCCATCAATGTGAAACTATCCAAATGTAACATTAGAACTGGTGATGATTGTGTCTCTATGATACAAGGAGTTAATAACGTTACCATCAACAAAGTTAATTGCGGTCCTGGACACGGTATTAGTATTGGTAGTCTTGGAAAGTATCAGAATGAACTAGAGGTGAGAGGCGTTCGTGTGCTGAACTGCACATTTTCTGGCACAGATAATGGCATCAGAATCAAGACATGGCCAGATAAGTATCCAGGTGCTGCATCAGATATTACTTTCAGTGACATTACCATGCAGAATGTTAAAAGACCTATTATCATTGACCAAGAGTATCAATGCACTCCTGCAAACTGTCAAAAGAAGCCATCACTTGTAAAGGTCAGCAATGTTGCTTTTGCAAATGTAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGTAAGCAGTTCCCATGCCAAAACATTAAGATTAGTAATATACATTTGAAGCATGCATCTAGCCCTATAAGTTCAAGATGTGCAAACATTAAACCTGTATATATAGGTATGCAGCAACCACCACCTTGCTGA 1266 0.4092 MATAKRVEIVILCFALACCYVNAGPRVRPIAGPDIYKGQNVAKDSLVPGEKIVNVMNFGAKPDGEFDCTQAFMDAWRATCKSPGQNRLLIPQGRFLVSSMFFAGPCMSPKPITIQVVGTVLATTDISEYENGEWLMFEDIAGLKLIGGGTFDGQGQDSWSQTEDCEKSGSTCIRNPSSLYFNKVTNGVIQNIKSVNSKGFHVFVTNCANMRLRRIGITAPDTSPNTDGIHISHSINVKLSKCNIRTGDDCVSMIQGVNNVTINKVNCGPGHGISIGSLGKYQNELEVRGVRVLNCTFSGTDNGIRIKTWPDKYPGAASDITFSDITMQNVKRPIIIDQEYQCTPANCQKKPSLVKVSNVAFANVRGTTISPIAVDLRCSKQFPCQNIKISNIHLKHASSPISSRCANIKPVYIGMQQPPPC* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0879 421 Pfam Glycosyl hydrolases family 28 80 409 IPR000743 GO:0004650|GO:0005975
Lan19g0879 421 Gene3D - 41 418 IPR012334 -
Lan19g0879 421 SUPERFAMILY Pectin lyase-like 48 421 IPR011050 -
Lan19g0879 421 SMART pbh1 287 308 IPR006626 -
Lan19g0879 421 SMART pbh1 257 277 IPR006626 -
Lan19g0879 421 SMART pbh1 207 233 IPR006626 -
Lan19g0879 421 SMART pbh1 317 338 IPR006626 -
Lan19g0879 421 SMART pbh1 384 405 IPR006626 -
Lan19g0879 421 SMART pbh1 234 255 IPR006626 -
Lan19g0879 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Lan19g0879 421 PANTHER POLYGALACTURONASE 2 421 - -
Lan19g0879 421 PANTHER - 2 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0879 Lan-Chr19 16260908 16264340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0879 52 421 Glycoside Hydrolase AT4G18180 46.649 4.33e-111 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0879 K01213 - gmx:106796220 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0651 4 9090100 9094698 Lan19g0879 19 16260908 16264340 LSH
Lan12g0874 12 15826333 15828543 Lan19g0879 19 16260908 16264340 PCT
Lan19g0879 19 16260908 16264340 Lan12g0874 12 15826333 15828543 PCT