Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0874 ATGGCCATTGCAAAAAGTGCTGTCATTCTTATTTTATGCTTTGCATTGGCCAATTATGCAGTTGCTGCCCCAAGGGAAAAGCAAGTTGGTAGTCCTGATATCTTTATGGGTAAAAATGTAGCTCAGGATGTGCTTCTTCCTGGTGAGAAACTAGTTGATGTCACAAGTTTTGGAGCCAAACCTGATGGAGAGACAGACAGCACTCAGGCTTTTATGGATGCATGGCAAACAACCTGCCATGTTAACAAAGAGCAAAGCAGAATGTATGTTCCTGCTGGAAGATTTCTGGTTTCTCCAATTATCTTTGCAGGGCCATGCCTTAGTCCAAACCCCATAACAATTCAAGTAATTGGAACTGTGTTGGCTAGCACTGATATTTCTGAGTATACAGAAGGTACTTGGCTCCAATTTGAGCACATTGATGGCCTCAAAATTATTGGTGGAGGTACTTTTGATGGACAAGGTAAGGATTCTTGGCAGTTTGTTGAGGACTGCGAAAAAAGAACTCAAACCTGCGTTAGAAATCCTTCTGGTCTTCATTTTGAGCATGTCCGCAATGCACTAATACAGGGTGTTAAATCCGTGAATCCGAAAGGCTTTCACGTATTTGTCACTAACTGTGCAAACTTCAGATTAAGAAGGCTTAAGTTGCTTGCACCAGAAACCAGTCCCAACACCGATGGCATTCATATCAGTCACTCTATCAATGTGAAATTATCAAGAAATGTTATTGCAACTGGTGATGATTGTGTCTCTATCATACAAGGAGCCTATAATGTTACCATCAATAAACTCAAATGTGGCCCTGGACATGGTATTAGTATCGGTAGTCTCGGAAAGTTTCCTGATGAGCTAGAGGTGAAAGGCATTATTGTCAAGAACTGTACAATGATTGGCACAACCAATGGCCTGAGAATCAAATCATGGCCAGACTTATATCCAGGTGGAGCTTCAGATATTAGTTTCACTGACATTATCATGGAAAATGTTAAAAATCCTGTCATCATTGACCAGGAGTATGAGTGTTATCCAAATTGCCAAAAGAAGCCATCACTTGTGAAGATAGCAAATGTTCATTTTGCAAATATAAGGGGAACAACAATTTCACCAGTTGCAGTTGATTTAAGGTGCAGCCAATTGAATCCATGTCAAGGAGTTACAATTCAGAACATTAACCTGAAGCTTGCAGGGGGTATCCCTACAACTTCTAGGTGTCAGTTTGCTAGACCTATCTTTGGTGGCATTCTATTCCCACCAGCATGCTCACTATAG 1272 0.4096 MAIAKSAVILILCFALANYAVAAPREKQVGSPDIFMGKNVAQDVLLPGEKLVDVTSFGAKPDGETDSTQAFMDAWQTTCHVNKEQSRMYVPAGRFLVSPIIFAGPCLSPNPITIQVIGTVLASTDISEYTEGTWLQFEHIDGLKIIGGGTFDGQGKDSWQFVEDCEKRTQTCVRNPSGLHFEHVRNALIQGVKSVNPKGFHVFVTNCANFRLRRLKLLAPETSPNTDGIHISHSINVKLSRNVIATGDDCVSIIQGAYNVTINKLKCGPGHGISIGSLGKFPDELEVKGIIVKNCTMIGTTNGLRIKSWPDLYPGGASDISFTDIIMENVKNPVIIDQEYECYPNCQKKPSLVKIANVHFANIRGTTISPVAVDLRCSQLNPCQGVTIQNINLKLAGGIPTTSRCQFARPIFGGILFPPACSL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0874 423 PANTHER - 2 421 - -
Lan12g0874 423 Pfam Glycosyl hydrolases family 28 84 407 IPR000743 GO:0004650|GO:0005975
Lan12g0874 423 SUPERFAMILY Pectin lyase-like 47 422 IPR011050 -
Lan12g0874 423 PANTHER POLYGALACTURONASE 2 421 - -
Lan12g0874 423 Gene3D - 46 412 IPR012334 -
Lan12g0874 423 SMART pbh1 287 308 IPR006626 -
Lan12g0874 423 SMART pbh1 184 233 IPR006626 -
Lan12g0874 423 SMART pbh1 234 255 IPR006626 -
Lan12g0874 423 SMART pbh1 317 338 IPR006626 -
Lan12g0874 423 SMART pbh1 257 277 IPR006626 -
Lan12g0874 423 SMART pbh1 350 390 IPR006626 -
Lan12g0874 423 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0874 Lan-Chr12 15826333 15828543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0874 51 421 Glycoside Hydrolase AT4G18180 44.186 3.75e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0874 K01213 - gmx:106796220 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0874 12 15826333 15828543 Lan12g0874 12 15826333 15828543 ECH
Lan12g0874 12 15826333 15828543 Lan4g0651 4 9090100 9094698 PCT
Lan12g0874 12 15826333 15828543 Lan19g0879 19 16260908 16264340 PCT
Lan4g0651 4 9090100 9094698 Lan12g0874 12 15826333 15828543 PCT
Lan19g0879 19 16260908 16264340 Lan12g0874 12 15826333 15828543 PCT