Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0612 ATGGCTTCTCTAACTCATCACTTATGTGCCCTTCGTTCTTCTCCACTCTCTTCAAAACCATTCCTTACCCATCATCATAAACATAATCCTCGCACTTCCATTGTTTGTTCTTCAATTGCAATTTCTAGTGCTCAAAACAAAGAGAGAATTAAGCTCAAACAACTTTTCGATGATGCTTATGAGAGATGTCGCAATGCTCCTATGGAAGGTGTTTCTTTTACCCTTGAAAATTTCACTGATGCTCTTGAAAAATATGACTTTGATTCTGAAGTTGGGACAAAGGTTAAGGGCACTGTATTTGGTACAGATGCTGGTGGAGCTTATGTAGACATTACCGCAAAGTCTACAGCGTACTTGCCCTTGCAAGAGGCAAGCATTCACAGAATTAAGCACGTACATGAGGCAGGCATAGTTTCCGGTGTCAGAGAGGAATTTGTAATCATTGGTGAGGTTGAAGCTGATGATAGCTTGATCCTGAGTTTAAAGTCTATCCAGTTTGACCTTTGTTGGGAACGCTGTAGACAACTTCAAGCAGAAGATGTTGTCATCAAGGGTAAGATTGTTGGTGCAAACAAGGGTGGACTTGTGGCTGAGGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCAACGAAATCAACTGGAGAAGATCTTCTCGAGAAGGAACTTCCTCTAAAGTTTGTGGAGGTAGATGAGGAACAGTCGAGACTTATCCTCAGTCACCGCAAAGCTGCGGCTGACAGCCAGGGACAGCTAGGAATTGGATCAGTTGTCACTGGTACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATGAGTGGTCTTCTTCACGTCAGTCAAATCAGTCATGATCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATACTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTTAGTCTTTCCACGAAGAAATTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTCGAGAAGGCGGAAGAGATGGCTCAAACATTCAGACAGAGGATAGCCCAAGCAGAAGCTATGGCTCGTGCTGATATGCTCAGGTTCCAGCCAGAGAGTGGATTAACTCTGAGCAGTGATGGGATCTTAGGACCACTTACTTCAGATTTGCCTGCAGAGGGACTGGATTTGAGTGAGGTGCCCTCAGTTGAAGATTCTTCTTGA 1227 0.4401 MASLTHHLCALRSSPLSSKPFLTHHHKHNPRTSIVCSSIAISSAQNKERIKLKQLFDDAYERCRNAPMEGVSFTLENFTDALEKYDFDSEVGTKVKGTVFGTDAGGAYVDITAKSTAYLPLQEASIHRIKHVHEAGIVSGVREEFVIIGEVEADDSLILSLKSIQFDLCWERCRQLQAEDVVIKGKIVGANKGGLVAEVEGLKGFVPFSQISTKSTGEDLLEKELPLKFVEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFIDIGGMSGLLHVSQISHDRITDIETVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSEVPSVEDSS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0612 408 SMART S1_6 178 244 IPR022967 -
Lan4g0612 408 SMART S1_6 255 325 IPR022967 -
Lan4g0612 408 SMART S1_6 90 162 IPR022967 -
Lan4g0612 408 Gene3D - 75 172 IPR012340 -
Lan4g0612 408 SUPERFAMILY Nucleic acid-binding proteins 256 335 IPR012340 -
Lan4g0612 408 Pfam S1 RNA binding domain 256 325 IPR003029 GO:0003676
Lan4g0612 408 Pfam S1 RNA binding domain 178 244 IPR003029 GO:0003676
Lan4g0612 408 Pfam S1 RNA binding domain 90 161 IPR003029 GO:0003676
Lan4g0612 408 ProSiteProfiles S1 domain profile. 92 162 IPR003029 GO:0003676
Lan4g0612 408 Gene3D - 173 252 IPR012340 -
Lan4g0612 408 Coils Coil 342 362 - -
Lan4g0612 408 ProSiteProfiles S1 domain profile. 180 244 IPR003029 GO:0003676
Lan4g0612 408 PANTHER 30S RIBOSOMAL PROTEIN S1 1 407 - -
Lan4g0612 408 CDD S1_RPS1_repeat_ec2_hs2 180 244 - -
Lan4g0612 408 SUPERFAMILY Nucleic acid-binding proteins 175 247 IPR012340 -
Lan4g0612 408 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 407 - -
Lan4g0612 408 SUPERFAMILY Nucleic acid-binding proteins 80 187 IPR012340 -
Lan4g0612 408 Gene3D - 253 329 IPR012340 -
Lan4g0612 408 MobiDBLite consensus disorder prediction 389 408 - -
Lan4g0612 408 PRINTS Ribosomal protein S1 signature 92 110 IPR035104 -
Lan4g0612 408 PRINTS Ribosomal protein S1 signature 110 124 IPR035104 -
Lan4g0612 408 PRINTS Ribosomal protein S1 signature 183 199 IPR035104 -
Lan4g0612 408 PRINTS Ribosomal protein S1 signature 201 218 IPR035104 -
Lan4g0612 408 CDD S1_RPS1_repeat_hs4 257 325 - -
Lan4g0612 408 ProSiteProfiles S1 domain profile. 257 325 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0612 Lan-Chr4 8515947 8519309 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0612 K02945 - bvg:104889146 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0612 4 8515947 8519309 Lan19g0806 19 14556307 14562365 LSH
Lan12g0913 12 16087415 16090989 Lan4g0612 4 8515947 8519309 PCT
Lan4g0612 4 8515947 8519309 Lan12g0913 12 16087415 16090989 PCT