Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0913 ATGAGTTGTGTGGGTCAGCAATTGAACCTAAGGTCCTTCTTCCCATCTTGTTGTTGGTGGAATAGTAATCAAACTAAGAAGCGAATTTCGTTTTCCATAGTGAATTCTGTTGCAATATCTAATGCGCAGACACAAAAGAGGTTAAGGCTCAAACAACTTTTCCGTGAAGCCAATGAGAGGTGCCTCAATGATCCCATGGATGGTGTTTCCTTCACCCTCCAAGACTTTACTCAAGCCCTAGATCACTATGACTTTCACTCTCAACTTGGTACCAAGGTTATAGGAACTGTGTTCTGCACGGATGAAAATGGAGCACTTGTAGAGATTGCTGCAAAATCTGCTGCGTATTTGCCCCTCCAAGAGGCTTGCATCCACAGAGTTAACCATGTGGAAGAAGCAGGCATAGTTCCTGGGTTCAGAGCGGAGTTTTTTATCATTGGTGAGAATGAGGCCAATGATAGTTTGATCTTGAGTTTGAGACCAATGCAGTATGGTCTTGCTTGGGAACGTTGTAGACAACTTCAAGCAGATAATGTTGTTGTCAACGGTAAGGTTGTCGGAGCAAAAAAAGGAGGGGTGATGGTTGAGGTTGAAGGCCTGAGAGGGTTTGTTCCATTTTCGCAGATATCAACGAAATCAACTGGAGAAGAGCTTCTTGAGAAGGAACTTCCTCTTAAATTTGAAGAGGTGGATGAGAAACAGTCTATACTCGTCCTTAGTAACCGCAAGGCCGTGGCTGACAGCCAGCCACAGCTGGGAATTGGATCAGTAGTCATTGGCTCTGTTCGAAGCCTAAAGCCATATGGTGCCATCATTGACATTGGTGGCATTAATGGTCTCCTTCATGTCAGTCAGATCAGTCATGACCGTGTAACAGATGTTGAAGCTGTTCTTCAACCTGGTGATATACTAAAGGTGATGATTTTAAGTCATGATCAGGAGAGGGGCCGAGTAAGTCTTTCCACGAAGAAGCTAGAACCTACTCATGGAGACATGATTCGTAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCGACGTGGAAGCTAAGGCTCGTGCTAATATGCTTAATTCCAGCCCGAGATTAACTCTCAGCAGCGGTGGATCTTACTTGAGAAGGGACTGA 1155 0.4485 MSCVGQQLNLRSFFPSCCWWNSNQTKKRISFSIVNSVAISNAQTQKRLRLKQLFREANERCLNDPMDGVSFTLQDFTQALDHYDFHSQLGTKVIGTVFCTDENGALVEIAAKSAAYLPLQEACIHRVNHVEEAGIVPGFRAEFFIIGENEANDSLILSLRPMQYGLAWERCRQLQADNVVVNGKVVGAKKGGVMVEVEGLRGFVPFSQISTKSTGEELLEKELPLKFEEVDEKQSILVLSNRKAVADSQPQLGIGSVVIGSVRSLKPYGAIIDIGGINGLLHVSQISHDRVTDVEAVLQPGDILKVMILSHDQERGRVSLSTKKLEPTHGDMIRNPKLVFEKAEEMAQTFRQRIADVEAKARANMLNSSPRLTLSSGGSYLRRD* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0913 384 SUPERFAMILY Nucleic acid-binding proteins 180 247 IPR012340 -
Lan12g0913 384 SUPERFAMILY Nucleic acid-binding proteins 254 329 IPR012340 -
Lan12g0913 384 Gene3D - 252 330 IPR012340 -
Lan12g0913 384 CDD S1_RPS1_repeat_hs4 255 323 - -
Lan12g0913 384 ProSiteProfiles S1 domain profile. 178 242 IPR003029 GO:0003676
Lan12g0913 384 ProSiteProfiles S1 domain profile. 255 323 IPR003029 GO:0003676
Lan12g0913 384 Pfam S1 RNA binding domain 178 240 IPR003029 GO:0003676
Lan12g0913 384 Pfam S1 RNA binding domain 254 323 IPR003029 GO:0003676
Lan12g0913 384 Gene3D - 173 251 IPR012340 -
Lan12g0913 384 Gene3D - 73 172 IPR012340 -
Lan12g0913 384 PANTHER 30S RIBOSOMAL PROTEIN S1 26 377 - -
Lan12g0913 384 SMART S1_6 253 323 IPR022967 -
Lan12g0913 384 SMART S1_6 88 160 IPR022967 -
Lan12g0913 384 SMART S1_6 176 242 IPR022967 -
Lan12g0913 384 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 26 377 - -
Lan12g0913 384 Coils Coil 340 360 - -
Lan12g0913 384 SUPERFAMILY Nucleic acid-binding proteins 87 186 IPR012340 -
Lan12g0913 384 ProSiteProfiles S1 domain profile. 90 160 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0913 Lan-Chr12 16087415 16090989 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0913 K02945 - bvg:104889146 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0913 12 16087415 16090989 Lan12g0913 12 16087415 16090989 ECH
Lan12g0913 12 16087415 16090989 Lan4g0612 4 8515947 8519309 PCT
Lan12g0913 12 16087415 16090989 Lan19g0806 19 14556307 14562365 PCT
Lan4g0612 4 8515947 8519309 Lan12g0913 12 16087415 16090989 PCT
Lan19g0806 19 14556307 14562365 Lan12g0913 12 16087415 16090989 PCT