Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0806 ATGGCGTCTCTTGCTCATAATTTAAGTGCCATTTGCTATTCTCCACTCTCTTCAAGACCAACCCTTATCCATAGCCACAAACAGAGGCGCACTTCTATTGTGTGTTCTTCAGTTGCAATATCAAGTGCACAGAACAAAGAGAGAATAAAGCTCAAAGAACTTTTTGAAGATGCTTATGAAAGATGTCGCACTGCTCCAATGGAAGGTGTTTCTTTTACTCTTGAAAACTTCACTGATGCTCTAGAAAAATATGATTTTGATGCTGAAGTTGGGACCAAGGTTAAGGGCACCATATTTGGTACAGATGCTGGTGGAGCTTATGTAGACATTACCGCAAAGTCCACAGCGTACTTGCCCCTACAAGAGGCATGCATCCACCGAATTAAATACGTACATGAGGCAGGCATAGTTTCTGGCGTCAGAGAGGAGTTTGTAATTATTGGTGAGATTGAAGCTGACGATAGCTTGATCTTGAGTTTAAAGTCTATCCAGTATGACCTTTGTTGGGAACGCTGTAGACAACTTCAAGCCGAAGATGTTGTTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGACTGGTGGCTGAGGTGGAGGGCCTTAAGGGGTTTGTTCCGTTCTCACAGATATCAGCGAAATCAACTGAAGAAGAGCTTCTTGAGAAGGATCTTCCTCTGAAGTTTGTGGAGGTGGATGTGGAACAATCCAGACTTATCCTCAGTCACCGCAAAGCTGCAGCTGACAGCCATGGACAGCTAGGAATTGGATCAGTAGTCACCGGCACTGTCCAAAGCCTAAAGCCGTATGGTGCCTTCATTGACATTGGTGGAATGAGTGGCCTCCTTCACATAAGTCAGATCAGTCATGACCGTATAACCGACATTGCAACTGCTCTTCAACCTGGTGATACGCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTTAGTCTTTCCACGAAGAAATTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAAACATTCAGACAAAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTAAGTGGTGATGGAATCTTAGGACCACTTACTTCAGACTTACCTGCAGAGGGATTGAATTTGAGTGAAGTGCCCCTAGCTCAAGATTCGTGA 1221 0.4513 MASLAHNLSAICYSPLSSRPTLIHSHKQRRTSIVCSSVAISSAQNKERIKLKELFEDAYERCRTAPMEGVSFTLENFTDALEKYDFDAEVGTKVKGTIFGTDAGGAYVDITAKSTAYLPLQEACIHRIKYVHEAGIVSGVREEFVIIGEIEADDSLILSLKSIQYDLCWERCRQLQAEDVVVKGKIVGANKGGLVAEVEGLKGFVPFSQISAKSTEEELLEKDLPLKFVEVDVEQSRLILSHRKAAADSHGQLGIGSVVTGTVQSLKPYGAFIDIGGMSGLLHISQISHDRITDIATALQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGPLTSDLPAEGLNLSEVPLAQDS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0806 406 SUPERFAMILY Nucleic acid-binding proteins 79 186 IPR012340 -
Lan19g0806 406 PANTHER 30S RIBOSOMAL PROTEIN S1 20 405 - -
Lan19g0806 406 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 20 405 - -
Lan19g0806 406 Gene3D - 172 250 IPR012340 -
Lan19g0806 406 Gene3D - 251 328 IPR012340 -
Lan19g0806 406 CDD S1_RPS1_repeat_hs4 256 324 - -
Lan19g0806 406 ProSiteProfiles S1 domain profile. 179 243 IPR003029 GO:0003676
Lan19g0806 406 ProSiteProfiles S1 domain profile. 91 161 IPR003029 GO:0003676
Lan19g0806 406 Coils Coil 341 361 - -
Lan19g0806 406 SUPERFAMILY Nucleic acid-binding proteins 255 334 IPR012340 -
Lan19g0806 406 Gene3D - 74 171 IPR012340 -
Lan19g0806 406 CDD S1_RPS1_repeat_ec2_hs2 179 243 - -
Lan19g0806 406 Pfam S1 RNA binding domain 177 243 IPR003029 GO:0003676
Lan19g0806 406 Pfam S1 RNA binding domain 255 324 IPR003029 GO:0003676
Lan19g0806 406 PRINTS Ribosomal protein S1 signature 91 109 IPR035104 -
Lan19g0806 406 PRINTS Ribosomal protein S1 signature 109 123 IPR035104 -
Lan19g0806 406 PRINTS Ribosomal protein S1 signature 182 198 IPR035104 -
Lan19g0806 406 PRINTS Ribosomal protein S1 signature 200 217 IPR035104 -
Lan19g0806 406 ProSiteProfiles S1 domain profile. 256 324 IPR003029 GO:0003676
Lan19g0806 406 SUPERFAMILY Nucleic acid-binding proteins 174 246 IPR012340 -
Lan19g0806 406 SMART S1_6 89 161 IPR022967 -
Lan19g0806 406 SMART S1_6 177 243 IPR022967 -
Lan19g0806 406 SMART S1_6 254 324 IPR022967 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0806 Lan-Chr19 14556307 14562365 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0806 K02945 - tcc:18603716 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0612 4 8515947 8519309 Lan19g0806 19 14556307 14562365 LSH
Lan12g0913 12 16087415 16090989 Lan19g0806 19 14556307 14562365 PCT
Lan19g0806 19 14556307 14562365 Lan12g0913 12 16087415 16090989 PCT