Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0123 ATGGCTGTTTCCATGAGAGATTTGGATCCAGTTTTCCAGGGAGCGGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCTATCCCAAAGTCCTCTTATGGGAAGTTTTTCACAGGAGACTCCTATGTGATCTTAAAGACAACTGCATCGAAAAGTGGTGCTCTGCGCCATGAAATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCGGCCATCAAGACAGTTGAGTTGGATGCAGCTCTTGGAGGACGTGCTGTACAATATCGTGAAGTACAGGGCCATGAAACTGAAAATTTTCTGTCTTATTTCAAACCATGTATTATACCTCAAGAAGGTGGAATTGCTTCTGGTTTTAAACATGCTGTGCCTGAAGAACATAAAACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTCAAAGAGGTTCCCTTTGCTCGATCTTCACTCAGCCATGATGATATTTATGTTCTTGATACTGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAGGATACGTACCATCAGGGGAAATGTGATGTGGCTGCTATTGAGGATGGAAAGTTGATGGCTGATCCTGAAACTGGAGAATTTTGGGGTTTATTTGGTGGTTTTGCTCCTTTTCCACGAAAAGCAGCCAGTGATGATGATAAGCCTTCTGATTCTTACCTTCCAAAGTTGCTTTGTGTTGAAAAGGGACAAGCAAAACCTGTTGAGACTGATTCTTTGAAAAGGGAATTACTAGACACAAATAAATGCTATATTCTTGATTGTGGGTTGGAAGTGTTTGTCTGGATGGGAAGATACACCTCTCTTGATGAAAGAAAACGTGCAAGTGGAGCTGCAGATGAGTTCGGCAGTGGCACTGCTCAACTGAAACCCCAACTAATTTGTGTTATTGAAGGATTTGAAACAGTGATGTTCAGGTCCAAGTTTGAGTCTTGGCCTCGGACTACTGATGTAACAGTAACTGAAGATGGCCGTGGCAAGATTGCTTCACTTCTTAAACGTCAAGGCATAAATGTGAAGGGTCTGTTGAAAGCTGATCCAATTAAGGAAGAGCCTCAACCTTACATCGATTGCGCAGGATATTTGCAGGTTTGGCATGTGATTGGTCAGCAAAAGATTCCTCTTCCAGCTTCTGACCAGTCAAAATTTTATACTGGAGATTGCTACATCTTTAAGTATACATATCCTGGAGAAGATAAGGAAGAATGTCTTATTGGAACATGGATCGGAAAGAATAGCGTTGAGGAAGAAAGAGCTTCAGCTAATTCACTGGCAAGCAAATTGGTTGAGTCAATGAAGTTTCAGGCTTCCCAGGCTCGCATATATGAAGACAAGGAACCAATTCAATTTTATACTATCTTTCAGACCTTTATTGTTCTTAAGGGTGGACTTAGTGATGCATATAAAACTTACATTGCGGAAAAGGAAATTCCAGATGAGACATACAGTGAGGATGGAGTTGCATTATTCCGCATCCAGGGCTCTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCTTCTTTGAATTCCTGTTATTGTTACATACTTCATAATGGGCCTGTTGTTTTTACATGGTCCGGAAGCTCTGCAACTGCAGTTGACCACGACCTTGTTGAGAGGATGCTGGATTTGATAAAGCCAAACTTACAAACCAAGCCACAAAGGGAAGGTACAGAGTCTGAGCAATTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGGTATTTAGGGAGGCTGAAAGTGATCCTCACCTATTTTCTTGTGACTTCTCGAAAGGAAATTTAAAGGTGACAGAGATATACAACTTTTCCCAGGACAATTTAATGACGGAAGACATTTTCATCTTGGATTGTCGCTCAGAAATCTTTCTCTGGGTTGGCAAGCAGGTCGACCTCAAGAGTAGAGCGCAGGCTCTAACAATTGGTGAGAAATATCTCGAGCTTGATTTCCTTCTAGAAAAATTATCTCAGGTGGCTCCAATATATGTTATCAATGAAGGGAGTGAGCCACCTTTCTTCACTCGTTTCTTTAAATGGGAATCTGCAAAATCTGCAATGTTGGGGAACTCATTTCAAAGGAAGCTTACAATTTTAAAGAATGGGGGTACTCCACTTTTGGATAAACCCAAACGGAGAAATCCTGTATCTTATGGGGGAAGGTCTAGTAGTGTGCCAGATAAATCCCAGCGTTCCTCCCGCAGAGTGTCTTTAAGTCCTGATCGTGTTCGTGTGCGGGGCAGGTCTCCAGCTTTTAATGCACTAGCAGCTACCTTTGAGAGCCCTAATGTTAGGAACCTTTCAACTCCTCCAGTAATTACTCCTCCAGTAATTACAAAGCTGTATCCAAAATCTCGGACACCAGATTTTTCAAAATTTGCACTCAAATCTAATGTGATAGCTGCACTTAGTTCTAGTTTTGAACAACCACCTTCAGCACGAGAAAGTATGATACCTCGGCCACTTAAAGTTACCCTCAAATCAAACCCCAAGATAAATGACAAGGAGAATCCTGTTAGCAGCAGAATGGAATCTCTTACCATACAGGAAGATGTAAAGAAGGATGAAGCTGAGGAAGGTCTCTCGATTTACCCCTATGAACGCATTAAAATAACTTCCACAGATCCTGTGACAGACATTGATGTGACTAGACGTGAGACTTATCTATCATCTGTGGAGTTCGAAGAGAAATTTGGGATGACAAAGGATGCTTTTTACAAGTTGCCCAAATGGAAACAGAACAAACTCAAAATGGCTATTCAGTTATTCTGA 2886 0.4127 MAVSMRDLDPVFQGAGQKAGLEIWRIENFNPVPIPKSSYGKFFTGDSYVILKTTASKSGALRHEIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETENFLSYFKPCIIPQEGGIASGFKHAVPEEHKTRLFVCRGKHVVHVKEVPFARSSLSHDDIYVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHQGKCDVAAIEDGKLMADPETGEFWGLFGGFAPFPRKAASDDDKPSDSYLPKLLCVEKGQAKPVETDSLKRELLDTNKCYILDCGLEVFVWMGRYTSLDERKRASGAADEFGSGTAQLKPQLICVIEGFETVMFRSKFESWPRTTDVTVTEDGRGKIASLLKRQGINVKGLLKADPIKEEPQPYIDCAGYLQVWHVIGQQKIPLPASDQSKFYTGDCYIFKYTYPGEDKEECLIGTWIGKNSVEEERASANSLASKLVESMKFQASQARIYEDKEPIQFYTIFQTFIVLKGGLSDAYKTYIAEKEIPDETYSEDGVALFRIQGSGPDNMQAIQVEPVASSLNSCYCYILHNGPVVFTWSGSSATAVDHDLVERMLDLIKPNLQTKPQREGTESEQFWDLLGGKSEYPSQKVFREAESDPHLFSCDFSKGNLKVTEIYNFSQDNLMTEDIFILDCRSEIFLWVGKQVDLKSRAQALTIGEKYLELDFLLEKLSQVAPIYVINEGSEPPFFTRFFKWESAKSAMLGNSFQRKLTILKNGGTPLLDKPKRRNPVSYGGRSSSVPDKSQRSSRRVSLSPDRVRVRGRSPAFNALAATFESPNVRNLSTPPVITPPVITKLYPKSRTPDFSKFALKSNVIAALSSSFEQPPSARESMIPRPLKVTLKSNPKINDKENPVSSRMESLTIQEDVKKDEAEEGLSIYPYERIKITSTDPVTDIDVTRRETYLSSVEFEEKFGMTKDAFYKLPKWKQNKLKMAIQLF* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0123 961 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lan4g0123 961 Gene3D Severin 389 501 IPR029006 -
Lan4g0123 961 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Lan4g0123 961 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Lan4g0123 961 PANTHER VILLIN 1 961 IPR007122 GO:0051015
Lan4g0123 961 MobiDBLite consensus disorder prediction 755 771 - -
Lan4g0123 961 CDD gelsolin_S5_like 517 608 - -
Lan4g0123 961 Gene3D Severin 517 612 IPR029006 -
Lan4g0123 961 SUPERFAMILY VHP, Villin headpiece domain 896 961 IPR036886 GO:0003779|GO:0007010
Lan4g0123 961 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 252 388 IPR036180 -
Lan4g0123 961 Gene3D Villin headpiece domain 884 961 IPR036886 GO:0003779|GO:0007010
Lan4g0123 961 CDD gelsolin_S6_like 621 718 - -
Lan4g0123 961 Gene3D Severin 7 132 IPR029006 -
Lan4g0123 961 Gene3D Severin 133 247 IPR029006 -
Lan4g0123 961 Gene3D Severin 613 733 IPR029006 -
Lan4g0123 961 SMART VILL_6 622 719 IPR007122 GO:0051015
Lan4g0123 961 SMART VILL_6 19 117 IPR007122 GO:0051015
Lan4g0123 961 SMART VILL_6 254 344 IPR007122 GO:0051015
Lan4g0123 961 SMART VILL_6 137 234 IPR007122 GO:0051015
Lan4g0123 961 SMART VILL_6 392 489 IPR007122 GO:0051015
Lan4g0123 961 SMART VILL_6 519 606 IPR007122 GO:0051015
Lan4g0123 961 SUPERFAMILY Actin depolymerizing proteins 511 615 - -
Lan4g0123 961 CDD gelsolin_S4_like 386 486 - -
Lan4g0123 961 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Lan4g0123 961 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Lan4g0123 961 ProSiteProfiles Headpiece (HP) domain profile. 896 961 IPR003128 GO:0003779|GO:0007010
Lan4g0123 961 SMART VHP_1 926 961 IPR003128 GO:0003779|GO:0007010
Lan4g0123 961 Pfam Villin headpiece domain 926 961 IPR003128 GO:0003779|GO:0007010
Lan4g0123 961 Pfam Gelsolin repeat 408 465 IPR007123 -
Lan4g0123 961 Pfam Gelsolin repeat 266 337 IPR007123 -
Lan4g0123 961 Pfam Gelsolin repeat 28 111 IPR007123 -
Lan4g0123 961 Pfam Gelsolin repeat 638 712 IPR007123 -
Lan4g0123 961 Pfam Gelsolin repeat 150 205 IPR007123 -
Lan4g0123 961 SUPERFAMILY Actin depolymerizing proteins 137 240 - -
Lan4g0123 961 CDD gelsolin_S1_like 12 124 - -
Lan4g0123 961 CDD gelsolin_S2_like 138 232 - -
Lan4g0123 961 Gene3D Severin 248 356 IPR029006 -
Lan4g0123 961 PANTHER VILLIN-3-LIKE 1 961 - -
Lan4g0123 961 MobiDBLite consensus disorder prediction 741 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0123 Lan-Chr4 1846089 1860600 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0123 - - adu:107483828 1640.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0123 4 1846089 1860600 Lan12g1029 12 16958550 16968719 PCT
Lan4g0123 4 1846089 1860600 Lan1g0381 1 3004483 3012663 PCT