Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1620 ATGAGTCGCCGAGGAATGGACGACGACGAATTCGACGAGGAGGAGGAAGAGCATGTAGCTGATTTCGACGAGGAGGAAGAGGAGGAGAGAGGCGGCGGAAGGAAGAGGAGGAGATCTGGCTTCATTGACGATGATGCGGATGAGGTCGATGAGGATGAAGAGGAAGAGGATGATGATGATGATGAGGATTTCGATGGTGGCGGAGGTGGTGGTGGCCGGAAGCGTCAGCGCAAAAGGAAGTCCGCTGCTTCCTATTTCGATGAAGAGGCGGCTGTCGATTCTGATGAGGAGGAGGAAGAGGAGGAAGGAGAGGATGACTTCATTGTTGACGGTGGAGCTGATCTTCCGGAGGAACATGGTGATAGAATGCGTCGTGCCCGTATGCTGCCACATGACGACGAAGACCATGAAGATCTTGAAGCTGTGGCACAAAGCATTCAACAAAGGTACGCAAGGCGTCAGGCAGATTATGATGAAGAAGCTACTGATGTAGAACAACAAGCTCTTTTGCCATCTGTTAGAGATCCAAAGCTCTGGATGGTGAAATGTGCAATTGGCCGTGAGCGGGAAACTGCTGTCTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGGTCAGTTATTGCTCTAGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAGTCCCATGTAAGAGAGGCTTGCAAAGGTCTACGCAACATATTTGGTCAAAAAATAACTCTTGTTCCAATTAGAGAAATGACTGATGTTCTGTCAGTTGAAAGTAAAGCTATTGACCTCGCCAGAGATACTTGGGTCAGAATGAAGATTGTGACATATAAAGGGGACCTTGCTAAAGTAGTGGATGTCGACAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTAAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTCTTAATGTCGAAGAAGCTAGGGAACTGCACATCCGTGTGGAGCATAGACGTGATGCCTACGGGGAAAGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGATTCTTATACAAAACAGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACATTTGATGAGCTTGAAAAATTTCGTAAACCGGGTGAGAATGGAGATGATGATGTAGCTAGTCTGTCAACTTTATTTGCAAACAGAAAGAAAGGGCATTTTTTGAAAGGTGACGCTGTCATCGTGATCAAGGGTGATTTAAAGAATTTGAAGGGCTGGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATTAAGGGTCTTCCAAAAACACTTGCTGTAAATGAAAAGGAACTCTGTAAATATTTTGAACCCGGAAACCATGTTAAGGTTGTTTCTGGTGCCCGAGAGGGTGCCACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAGTATCTGATACAACAAAGGAACATATCCGTGTGTTTGCTGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAGTTACTAAAATTGGAGACTACGAACTTCGTGATCTTGTACTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTCCTGACCGAGCTGAAGTCGTGCTTGTTAAATTGAGAGAGATCAAATGTAAGTTAGATAAGAAAATCAGCGTGCAAGACAGATTCAAGAACACCGTATCAGCAAAGGATGCTGTGCGGATTGTTGAGGGTCCCTGCAAAGGCAAACAAGGTCCAGTGGAGCACATATATAGGGGAATCTTGTTCATTTCTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCTCAATCATGTGTAGTTGTCGGAGGTTCACGCTCCAATGGGGACAGAAATGGTGATGCCTACTCAAGATTCGCTAGCCTCAGAACCCCCCCTCGTATTCCACACTCCCCGAGTAGGTTTTCTCGAGGAGGGCCTCCAAATCATTCTGGAGGAAGGGGCAGAGGTGGAAGGGGGCACGATGGTCTTACAGGTTCAACAGTTAAAGTACGCCAGGGTCCTTACAAAGGTTATCGTGGGCGTGTTATAGAAGTTAAAGGCACATCAGTTCGGGTTGAACTGGAGTCCCAAATGAAGGTTGTGACAGTGGACCGCAACCATATATCGGACAATGTAGCTGTAACCCCATATCGTGAATCTCGATACGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCTTACATCCATATATGACTCCTATGCGAGATCCTGGAGCCACCCCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTATCAGCCTGGAAGCCCTGCTTCACGGCCATATGAAGCTCCAACTCCTGGTGCTGGTTGGGCCAGCACTCCTGGTGGCAATTATAGTGAGGCTGGGACTCCCCGGGACGGTTCTGCCTATGCCAATGCTCCAAGTCCATATTTACCGTCAACACCTGGTGGGCAGCCTATGACACCAAATTCAGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACTGGTCTGGACATGATGTCCCCAGTTTTAGCTGGGGACAACGAAGGGCCTTGGTTTATACCAGACATATTAGTCAATGTACACAAGCCCGGAGAGGAATCACTTGGAGTTATACGTGAGCTTCTTCCGGATGGCTCTTGCAGGGTAGCTCTTGGATCTAGCGGAAATGGTGAAACAATAACAGCCCTTCCTAGTGAAATGGAAGCTGTAGTGCCAAGGAAATCAGACAAAATAAAAATCATGGGTGGTGCATTGCGTGGTGCTACAGGCAAGTTGATTGGTGTTGATGGTACCGATGGTATTGTAAAGGTAGACGACACTTTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAAGCTTGA 3093 0.4614 MSRRGMDDDEFDEEEEEHVADFDEEEEEERGGGRKRRRSGFIDDDADEVDEDEEEEDDDDDEDFDGGGGGGGRKRQRKRKSAASYFDEEAAVDSDEEEEEEEGEDDFIVDGGADLPEEHGDRMRRARMLPHDDEDHEDLEAVAQSIQQRYARRQADYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVIALDHLKNYIYVEADKESHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIVTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVEEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDDDVASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAREGATGMVVKVEQHVLILVSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRAEVVLVKLREIKCKLDKKISVQDRFKNTVSAKDAVRIVEGPCKGKQGPVEHIYRGILFISDRHHLEHAGFICVKAQSCVVVGGSRSNGDRNGDAYSRFASLRTPPRIPHSPSRFSRGGPPNHSGGRGRGGRGHDGLTGSTVKVRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPASRPYEAPTPGAGWASTPGGNYSEAGTPRDGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGLDMMSPVLAGDNEGPWFIPDILVNVHKPGEESLGVIRELLPDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQA* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1620 1030 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Lan3g1620 1030 CDD KOW_Spt5_6 971 1028 IPR041980 -
Lan3g1620 1030 PIRSF Spt5 2 1030 IPR017071 GO:0006357|GO:0032784
Lan3g1620 1030 MobiDBLite consensus disorder prediction 28 44 - -
Lan3g1620 1030 CDD KOW_Spt5_5 698 747 IPR041978 -
Lan3g1620 1030 PANTHER SUPPRESSOR OF TY 5 23 1028 IPR039659 GO:0006357|GO:0032784
Lan3g1620 1030 MobiDBLite consensus disorder prediction 89 111 - -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 8 27 - -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 883 897 - -
Lan3g1620 1030 SMART kow_9 699 726 IPR005824 -
Lan3g1620 1030 SMART kow_9 469 496 IPR005824 -
Lan3g1620 1030 SMART kow_9 593 620 IPR005824 -
Lan3g1620 1030 SMART kow_9 977 1004 IPR005824 -
Lan3g1620 1030 SMART kow_9 417 444 IPR005824 -
Lan3g1620 1030 SMART kow_9 266 293 IPR005824 -
Lan3g1620 1030 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 23 1028 - -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 786 911 - -
Lan3g1620 1030 Gene3D - 157 259 IPR036735 GO:0006355
Lan3g1620 1030 CDD KOW_Spt5_2 418 468 IPR041975 -
Lan3g1620 1030 Gene3D - 472 521 IPR014722 -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 651 709 - -
Lan3g1620 1030 Gene3D - 412 469 IPR014722 -
Lan3g1620 1030 SMART nusgn_4 175 261 IPR006645 GO:0140673
Lan3g1620 1030 CDD NGN_Euk 177 259 IPR039385 -
Lan3g1620 1030 CDD KOW_Spt5_4 597 639 IPR041977 -
Lan3g1620 1030 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lan3g1620 1030 SUPERFAMILY Translation proteins SH3-like domain 410 448 IPR008991 -
Lan3g1620 1030 Pfam Early transcription elongation factor of RNA pol II, NGN section 177 258 IPR005100 -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 45 65 - -
Lan3g1620 1030 Gene3D - 682 749 IPR014722 -
Lan3g1620 1030 CDD KOW_Spt5_1 270 307 IPR041973 -
Lan3g1620 1030 MobiDBLite consensus disorder prediction 1 118 - -
Lan3g1620 1030 Pfam Spt5 transcription elongation factor, acidic N-terminal 85 171 IPR022581 -
Lan3g1620 1030 CDD KOW_Spt5_3 469 519 IPR041976 -
Lan3g1620 1030 Pfam KOW motif 472 498 IPR005824 -
Lan3g1620 1030 Pfam KOW motif 703 732 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1620 Lan-Chr3 28035671 28044552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1620 K15172 - gmx:100801380 1684.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0738 15 16309142 16322150 Lan3g1620 3 28035671 28044552 LSH
Lan14g0569 14 11913205 11920692 Lan3g1620 3 28035671 28044552 LSH