Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0738 ATGGTTTGCTCAGAGACCAAGATTGAAGAAAAACGAAAATCATACAATGTGGTGGAAACTGGAAAGATTAACGTAGAAGCTGAGATCATAAGGCTAAGGTTACCGAGTCTCAGATTTTTGTGGACACGGTCCTTGGCCCTAAAAGCTTTTGAAAAACGAGCACTTTCAACTTCATCCATCATTGAACCAACAAATAGCACCACCACTTTGATAAGAAAAGCAGGTCCACAGTTTAAAATTTGTTCTAATTTAGTAATTTTACTTTTACAGCTTTTGCTGTTATTGCTGTTACCATATATCTATGGAAGTCTCGCACACAGCATCACCCAACGCCTTATCATCACTCTCACATCAGAAGAGAACGAACAGTTAGGGTTTTCTCTTCTCTTGTTCTGCGGCACCGTCTTCGTGAGTCGCCGAGGAATGGACGACGACGAATTCGACGACGAGGAGGAGGAAGAGCAGGTCGCCGATTTCAACGAGGTGGAGGAGGAGGAGGAGGTGGAGGAGAGAGGTGGCGTTGGCGGAAGGAAGAGGAGGAGATCTGGCTTCATTGACGAAGATGCGGAGGAGGACGATGAGGATGAAGAGGAAGAGGATGATGATGATGATGAGGATTTCGATGGCAGAGGTGGTGGTGGAAGGAAGCGCCAGCGCAAGAAGAAGAACGCTGCTTCGTTCTTTGATGAAGAGGCTGCTGTTGATTCTGATGAGGAGGAGGAAGAGGAGGAAGGAGAGGATGACTTCATTGTTGACGGTGGAGCTGATCTTCCTGAGGAACATGATGGCAGAAATGTGCGTCGTGGTCGTATGTTGCCACATGATGAAGAAGATCATGAAGATCTTGAAGCTGTGGCAAAAAGCATTCAAGAAAGGTATGGAAGGCGCCAGGCAGAGTATGATGAAGAAGCTACTGATGTAGAACAGCAAGCTCTTTTGCCATCTGTGAGAGATCCAAAGCTCTGGATGGTGAAATGTGCGATTGGTCGTGAGCGGGAAACGGCTGTTTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATTAGGTCAGTTATTGCTCTCGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAGGCACATGTGAGAGAGGCTTGCAAAGGTCTACGCAACATATTTGGCCAAAAAATAACTCTTGTTCCGATCAGAGAAATGACTGATGTCCTGTCAGTTGAAAGCAAAGCTATTGACCTTGCCAGAGATACTTGGGTCAGAATGAAAATTGGAACATATAAAGGGGACCTTGCCAAAGTTGTGGATGTTGACAATGTGCGGCAGAGAGTTACAGTGAAGCTAATTCCAAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTAAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTCTAAATGTTGAAGAAGCCAGGGAACTGCACATCCGTGTGGAGCATAGACGTGATGCCTATGGGGAGCGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGTTTTTTATACAAAACAGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACATTTGATGAGCTTGAAAAATTTCGCAAACCGGGTGAGAATGGAGATGGTGATGTAGCTAGTCTGTCAACTTTATTTGCAAACAGAAAGAAAGGGCATTTTTTGAAAGGTGATGCTGTAATCGTTATCAAGGGTGATTTAAAGAATTTGAAGGGGTGGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGGCCAGAAATTAAGGGTCTTCCAAAAACTCTTGCTGTAAATGAAAAGGAACTGTGCAAATATTTTGAACCCGGAAACCATGTTAAGGTTGTTTCTGGTGCTCAAGAGGGTGCGACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAATATCTGATACAACAAAGGAACATATCCGTGTGTTTGCCGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAGTTACAAGAATTGGGGACTATGAACTTCGTGATCTTGTACTACTCGATAATATGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTCCCTGACCGAGCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAATGTAAGTTAGATAAGAAAATCAGCGTGCAAGACAGATTCAAAAACACAGTATCAGCAAAAGATGTTGTGCGGATTATTGAGGGTCCCTGCAAAGGCAAACAAGGTCCTGTGGAGCACATATATAGAGGAATCTTGTTCATCTGTGATCGTCATCATCTTGAACATGCCGGCTTTATATGTGTTAAGGCTCAATCATGTGTAGTTGTGGGAGGTTCACGCTCCAATGGGGACAGAAATGGTGATGCCTCCTCGAGATTTGCCAGCCTTAGAACCCCCACTCGTATTCCACAGTCCCCGAGTAGGTTTTCTCGGGGAGGGCCTCCAAATCATTCTGGAGGAAGGGGCAGAGGTGGAAGGGGGCACGATGGTCTGACAGGTTCAACAGTTAAAGTACGCCAGGGTCCCTACAAAGGTTATCGTGGGCGTGTTATAGAAGTTAAAGGCACATCAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTGACTGTTGACCGCAATCATATATCTGACAATGTGGCTGTAACTCCATATCGTGAATCTCGATACGGGATGGGAAGTGAAACCCCGATGCATCCTTCTAGAACTCCCTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCAACCCCTATTCATGATGGAATGAGAACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCGAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTACCAACCAGGAAGCCCTGCTTCACGGCCATATGATGCTCCAACTCCTGGTGCTGGTTGGGCCAGCACTCCTGGTGGCAATTATAGTGAGGCTGGGACTCCCCGGGACAGTTCTGCCTATGCCAATGCTCCAAGTCCATATTTACCATCAACACCTGGCGGGCAGCCTATGACACCAAATTCAGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAATGAAGGCCCTTGGTTTATGCCAGAGATATTAGTCAATGTACACAAGCCTGGAGAGGAGTCAGTTGGAGTTATACGAGAGCTTCTTCCGGACGGATCTTGCAGGGTAGCTCTGGGATCTAGTGGAGATGGTGACACAATAACAGCCCTTCCCAGTGAAATGGAAGCTGTAGTACCAAGGAAATCAGACAAAATAAAAATCATGGGTGGTGCATTGCGTGGTGCCACAGGCAAGTTGATTGGTGTTGATGGTACTGATGGTATTGTAAAAGTAGATGACACATTGGATGTCAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCCATCTTCATAA 3528 0.4521 MVCSETKIEEKRKSYNVVETGKINVEAEIIRLRLPSLRFLWTRSLALKAFEKRALSTSSIIEPTNSTTTLIRKAGPQFKICSNLVILLLQLLLLLLLPYIYGSLAHSITQRLIITLTSEENEQLGFSLLLFCGTVFVSRRGMDDDEFDDEEEEEQVADFNEVEEEEEVEERGGVGGRKRRRSGFIDEDAEEDDEDEEEEDDDDDEDFDGRGGGGRKRQRKKKNAASFFDEEAAVDSDEEEEEEEGEDDFIVDGGADLPEEHDGRNVRRGRMLPHDEEDHEDLEAVAKSIQERYGRRQAEYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVEEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNMSFGVIIRVESEAFQVLKGVPDRAEVVLVKLREIKCKLDKKISVQDRFKNTVSAKDVVRIIEGPCKGKQGPVEHIYRGILFICDRHHLEHAGFICVKAQSCVVVGGSRSNGDRNGDASSRFASLRTPTRIPQSPSRFSRGGPPNHSGGRGRGGRGHDGLTGSTVKVRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPASRPYDAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWFMPEILVNVHKPGEESVGVIRELLPDGSCRVALGSSGDGDTITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAPSS* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0738 1175 CDD KOW_Spt5_2 561 611 IPR041975 -
Lan15g0738 1175 CDD KOW_Spt5_3 612 662 IPR041976 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 792 852 - -
Lan15g0738 1175 PIRSF Spt5 137 1174 IPR017071 GO:0006357|GO:0032784
Lan15g0738 1175 PANTHER SUPPRESSOR OF TY 5 161 1172 IPR039659 GO:0006357|GO:0032784
Lan15g0738 1175 MobiDBLite consensus disorder prediction 998 1017 - -
Lan15g0738 1175 Pfam Spt5 transcription elongation factor, acidic N-terminal 227 314 IPR022581 -
Lan15g0738 1175 Gene3D - 825 892 IPR014722 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 930 1054 - -
Lan15g0738 1175 Gene3D - 555 612 IPR014722 -
Lan15g0738 1175 Pfam Early transcription elongation factor of RNA pol II, NGN section 320 401 IPR005100 -
Lan15g0738 1175 ProSitePatterns Ribosomal protein L24 signature. 564 581 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lan15g0738 1175 CDD KOW_Spt5_1 413 450 IPR041973 -
Lan15g0738 1175 SMART kow_9 612 639 IPR005824 -
Lan15g0738 1175 SMART kow_9 409 436 IPR005824 -
Lan15g0738 1175 SMART kow_9 1121 1148 IPR005824 -
Lan15g0738 1175 SMART kow_9 736 763 IPR005824 -
Lan15g0738 1175 SMART kow_9 842 869 IPR005824 -
Lan15g0738 1175 SMART kow_9 560 587 IPR005824 -
Lan15g0738 1175 CDD KOW_Spt5_6 1115 1172 IPR041980 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 1026 1040 - -
Lan15g0738 1175 SMART nusgn_4 318 404 IPR006645 GO:0140673
Lan15g0738 1175 MobiDBLite consensus disorder prediction 792 825 - -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 145 169 - -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 254 268 - -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 231 253 - -
Lan15g0738 1175 SUPERFAMILY Translation proteins SH3-like domain 553 591 IPR008991 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 145 268 - -
Lan15g0738 1175 Gene3D - 300 402 IPR036735 GO:0006355
Lan15g0738 1175 Gene3D - 409 451 IPR014722 -
Lan15g0738 1175 CDD KOW_Spt5_4 740 782 IPR041977 -
Lan15g0738 1175 Pfam KOW motif 846 875 IPR005824 -
Lan15g0738 1175 Pfam KOW motif 615 640 IPR005824 -
Lan15g0738 1175 Gene3D - 615 664 IPR014722 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 170 186 - -
Lan15g0738 1175 CDD NGN_Euk 320 402 IPR039385 -
Lan15g0738 1175 CDD KOW_Spt5_5 841 890 IPR041978 -
Lan15g0738 1175 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 161 1172 - -
Lan15g0738 1175 SUPERFAMILY Translation proteins SH3-like domain 604 663 IPR008991 -
Lan15g0738 1175 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0738 Lan-Chr15 16309142 16322150 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0738 K15172 - gmx:100801380 1711.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0738 15 16309142 16322150 Lan14g0569 14 11913205 11920692 LSH
Lan15g0738 15 16309142 16322150 Lan3g1620 3 28035671 28044552 LSH