Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan14g0569 | ATGAGTCGCCGTGAAATGGACGACGACGAATTCGACGAGGAGGAGGAAGAAGAGGAGCAGGTGGCCGATTTCGACGAGGAGGAGGCGGAAGAGGAGGAGGAAGTAGGTCGCGGCGGAAGGAAGAGGAGGAGATCTGGCTTCTTCGATGAGGATGCGGAGGAAGTTGATGATGATGAAGAGGAGGAGGAGGATGATGATGACGATGAGGATTTCGATGGCGGTGGCGGTGGTCGGAAGCGCCAGCGCAAGAAGCCCTCTGCTTCTTCGTTCTTCGATGAAGAGGCTAAAGTCGATTCTGATGAGGAAGAGGAAGAGGAGGAAGGAGAAGATGACTTCATTGTTGACGGTGGAGCTGATCTTCCGGAGGAACATGATGGTAGAAACGTGCGTCCTGGCCGTATGCTGCCACATGGCGAAGAAGACCATGAAGATCTTGAAGCTATGGCCAAAAGAATTCAACAAAGGTATGCAAAGCGCCAGTCAGATTATGATGAAGAAGCTACTGATGTAGAACAACAAGCTCTTTTGCCATCTGTGAGAGATCCAAAGCTCTGGATGGTGAAATGTGCGATTGGTCGTGAGCGGGAAACTGCTGTTTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGGTCAGTTGTTGCTCTCGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAGGCCCATGTGAGAGAGGCTTGCAAAGGTCTACGCAACATATTTGGCCAAAAAATAACGCTTGTTCCCATCAGAGAAATGACCGATGTTCTGTCAGTTGAAAGCAAAGCTATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGAACATATAAAGGAGACCTTGCCAAAGTAGTAGATGTCGACAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGATAGACTTACAAGCCCTTGCAAGCAAATTGGAAGGTAGAGAAGTTGTAAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTCTGAATGTCGAAGAAGCTAGGGAACTGCACATCCGTGTGGAGCATAGACGTGATACATATGGGGAACGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGATTCTTATACAAAACAGTATCAATAAAATCAATTAGTGCTCAGAACATCAAACCTACATTTGATGAACTTGAAAAATTCCGTAAACCGGGTGAGAATGGAGATGGTGATGTAGCTAGTCTGTCAACCTTATTTGCAAACAGAAAGAAAGGGCATTTTTTGAAAGGTGATGCTGTCATTGTGATCAAGGGTGACTTAAAGAATTTGAAGGGGTGGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGGCCGGAAATCAAGGGTCTACCAAAAACTCTTGCTGTGAACGAAAAGGAACTGTGTAAATATTTTGAACCCGGAAACCATGTTAAGGTCGTTTCTGGTGCTCAAGTGGGTGCCACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATTCTAATATCTGATACAACCAAGGAACATATCCGTGTGTTTGCTGATGATGTTGTGGAAAGTTCTGAAGTGACCACTGGAGTTACAAGCATTGGGGATTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAAGCATTTCAGGTTCTTAAGGGTGTTCCTGACCGAGCTGAAGTTGTGCTTGTTAAATTAAGAGAGGTCAAATCTAAATTAGATAAGAAGATAAGCGTGCAAGACAGATTCAAAAATACAGTTTCAGCAAAGGATGTTGTGCGAATTGTGGAGGGTCCCTGCAAAGGCAAACAAGGTCCTGTGGAGCACATATATAGAGGAATCTTGTTCATCTGTGATCGCCACCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCTCAATCATGTGTGGTTGTAGGAGGTTCACGTTCCAATGGGGACATAAATGGCAATGCCTACTCTAGATTTGCCAGCCTCAGAACCCCCTCTCGTATTCCACAGTCCCCGAGTCGGTTTTCTAGGGGAGGGCCTCCAATTCATTCTGGAGGAAGGGGCAGAGGTGGAAGAGGGCATGATGGTCTGACAGGTTCAACAGTTAAGGTACGCCAGGGTCCCTACAAAGGTTATCGTGGGCGTGTTATTGAAGTTAAAGGCACATCAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTGACAGTTGACCGCAACCATATATCTGACAATGTGGCTGTAACCCCCTATCGTGAATCTCGATACGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCGACCCCTATTCACGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAGGATGGAAATCCAGGCTCTTGGGGAGCAAGCCCACAGTACCAGCCAGGAAGCCCTGTTTCACGGCCATATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGCACTCCTGGTGGCAATTATAATGAGGCTGGGACTCCCCGAGACAGTTCTGCCTTCGCCAATGCTCCAAGTCCATATTTACCATCAACACCTAGTGGGCAGCCTCTGACACCAAATTCAGTGTCTTATCTTCCTGGCACCCCTGGAGGACAACCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGAACAGCGAAGGGCCTTGGTTTATGCCAGACATATTAGTTAATGTACACAAGCCTGGAGAGGAATCAGTTGGAGTTATAAGAGAGGTTCTTACGGATGGCTCTTGCAGGGTAGCTCTCGGATCTAGCGGGAACGGTGAAACAATAACTGCCCTTCCTAGTGAAATGGAGGCTGTGGTACCAAGGAAATCAGATAAAATAAAAATAATGGGTGGCTCATTGTGTGGTGCCACAGGCAAGTTGATTGGTGTGGATGGTACTGATGGTATTGTAAAGGTAGATGACACTTTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAAGTTTGA | 3114 | 0.4595 | MSRREMDDDEFDEEEEEEEQVADFDEEEAEEEEEVGRGGRKRRRSGFFDEDAEEVDDDEEEEEDDDDDEDFDGGGGGRKRQRKKPSASSFFDEEAKVDSDEEEEEEEGEDDFIVDGGADLPEEHDGRNVRPGRMLPHGEEDHEDLEAMAKRIQQRYAKRQSDYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVVALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALASKLEGREVVKKKAFVPPPRFLNVEEARELHIRVEHRRDTYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQVGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTSIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRAEVVLVKLREVKSKLDKKISVQDRFKNTVSAKDVVRIVEGPCKGKQGPVEHIYRGILFICDRHHLEHAGFICVKAQSCVVVGGSRSNGDINGNAYSRFASLRTPSRIPQSPSRFSRGGPPIHSGGRGRGGRGHDGLTGSTVKVRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPVSRPYEAPTPGAGWASTPGGNYNEAGTPRDSSAFANAPSPYLPSTPSGQPLTPNSVSYLPGTPGGQPMTPGTGGLDMMSPVLGGNSEGPWFMPDILVNVHKPGEESVGVIREVLTDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGSLCGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQV* | 1038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 1 | 136 | - | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 117 | 136 | - | - | |
| Lan14g0569 | 1037 | SUPERFAMILY | Translation proteins SH3-like domain | 416 | 454 | IPR008991 | - | |
| Lan14g0569 | 1037 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 90 | 177 | IPR022581 | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 7 | 33 | - | - | |
| Lan14g0569 | 1037 | PIRSF | Spt5 | 1 | 1037 | IPR017071 | GO:0006357|GO:0032784 | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 861 | 903 | - | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 95 | 116 | - | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 675 | 715 | - | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 475 | 502 | IPR005824 | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 423 | 450 | IPR005824 | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 984 | 1011 | IPR005824 | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 705 | 732 | IPR005824 | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 272 | 299 | IPR005824 | - | |
| Lan14g0569 | 1037 | SMART | kow_9 | 599 | 626 | IPR005824 | - | |
| Lan14g0569 | 1037 | Gene3D | - | 418 | 475 | IPR014722 | - | |
| Lan14g0569 | 1037 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT5 | 26 | 1035 | - | - | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_5 | 704 | 753 | IPR041978 | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 72 | 94 | - | - | |
| Lan14g0569 | 1037 | Gene3D | - | 478 | 527 | IPR014722 | - | |
| Lan14g0569 | 1037 | SUPERFAMILY | Translation proteins SH3-like domain | 467 | 526 | IPR008991 | - | |
| Lan14g0569 | 1037 | CDD | NGN_Euk | 183 | 265 | IPR039385 | - | |
| Lan14g0569 | 1037 | PANTHER | SUPPRESSOR OF TY 5 | 26 | 1035 | IPR039659 | GO:0006357|GO:0032784 | |
| Lan14g0569 | 1037 | Coils | Coil | 14 | 35 | - | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 51 | 71 | - | - | |
| Lan14g0569 | 1037 | Gene3D | - | 691 | 755 | IPR014722 | - | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_1 | 276 | 313 | IPR041973 | - | |
| Lan14g0569 | 1037 | SMART | nusgn_4 | 181 | 267 | IPR006645 | GO:0140673 | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_6 | 978 | 1035 | IPR041980 | - | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_3 | 475 | 525 | IPR041976 | - | |
| Lan14g0569 | 1037 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 183 | 264 | IPR005100 | - | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_2 | 424 | 474 | IPR041975 | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
| Lan14g0569 | 1037 | MobiDBLite | consensus disorder prediction | 794 | 916 | - | - | |
| Lan14g0569 | 1037 | Pfam | KOW motif | 478 | 503 | IPR005824 | - | |
| Lan14g0569 | 1037 | Pfam | KOW motif | 709 | 738 | IPR005824 | - | |
| Lan14g0569 | 1037 | Gene3D | - | 163 | 265 | IPR036735 | GO:0006355 | |
| Lan14g0569 | 1037 | CDD | KOW_Spt5_4 | 603 | 645 | IPR041977 | - | |
| Lan14g0569 | 1037 | Gene3D | - | 272 | 314 | IPR014722 | - | |
| Lan14g0569 | 1037 | ProSitePatterns | Ribosomal protein L24 signature. | 427 | 444 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan14g0569 | Lan-Chr14 | 11913205 | 11920692 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan14g0569 | K15172 | - | gmx:100801380 | 1698.33 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan14g0569 | 14 | 11913205 | 11920692 | Lan14g0569 | 14 | 11913205 | 11920692 | ECH | |
| Lan15g0738 | 15 | 16309142 | 16322150 | Lan14g0569 | 14 | 11913205 | 11920692 | LSH | |
| Lan14g0569 | 14 | 11913205 | 11920692 | Lan3g1620 | 3 | 28035671 | 28044552 | LSH |