Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan3g1453 | ATGGCATCAACTATAGCAACAATGGCAATGATCAACCCCATGAAGCTTCTTACAACACCATCATCAAAACCCATTTCCCTTCTTTCCATGCACACCATCCCAAAGGGTCTAGCCTCAACAAAACTCCATGCAAAAACCAACATGCAAACAACAACTTCATCAATTTCCATAGCAGGAAGTGCTATTGCTGGTGCAATTTTCTCATCACTTGGAAGCTGTGATGCTGCTTTTGCTACACAACAACTAGCTCAAATAGCAGAAGGTGGTGGTGGTGGTGATAACCGTGGCATAGCACTTTTGTTACCTATAATTCCAGCCATAGCATGGGTTCTGTTCAACATCTTTCAGCCAGCACTTAACCAAATCAACCGCATGAGGAGCATAAAGGGTGTTGTCATTGGTCTTGGTCTTGGTCTTGGTGGCTTGTTGGGTGCATCTGATGCATCAGCTAGTGAAATGGCTGTGATTGCTGATGCTGCTGCTGCTGCAACAGGAAGTGACAATAGGGGTCAGCTTCTGCTGTTTGTGGTTGCACCTGCTATTCTTTGGGTTCTATACAACATTTTGCAGCCTGCTTTGAACCAACTTAACAGGATGAGATCTCAGTAG | 609 | 0.4466 | MASTIATMAMINPMKLLTTPSSKPISLLSMHTIPKGLASTKLHAKTNMQTTTSSISIAGSAIAGAIFSSLGSCDAAFATQQLAQIAEGGGGGDNRGIALLLPIIPAIAWVLFNIFQPALNQINRMRSIKGVVIGLGLGLGGLLGASDASASEMAVIADAAAAATGSDNRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSQ* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan3g1453 | 202 | Pfam | Photosystem II protein Y (PsbY) | 167 | 199 | IPR009388 | GO:0009523|GO:0015979|GO:0016021|GO:0030145 | |
| Lan3g1453 | 202 | Pfam | Photosystem II protein Y (PsbY) | 93 | 125 | IPR009388 | GO:0009523|GO:0015979|GO:0016021|GO:0030145 | |
| Lan3g1453 | 202 | PANTHER | PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC | 1 | 202 | - | - | |
| Lan3g1453 | 202 | Hamap | Photosystem II protein Y [psbY]. | 93 | 127 | IPR009388 | GO:0009523|GO:0015979|GO:0016021|GO:0030145 | |
| Lan3g1453 | 202 | PANTHER | PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC | 1 | 202 | IPR038760 | GO:0009523 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan3g1453 | Lan-Chr3 | 26086675 | 26087623 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan3g1453 | K02723 | - | qsu:112015924 | 206.453 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan14g0212 | 14 | 2473034 | 2473936 | Lan3g1453 | 3 | 26086675 | 26087623 | LSH | |
| Lan12g0588 | 12 | 12726409 | 12727295 | Lan3g1453 | 3 | 26086675 | 26087623 | PCT |