Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0588 ATGGCAGCAACTACCATAGCCTCATTTGCCATGATCAATGCAAAATTCCCCAACCCCACCAACACCAAACTCATCACTTCAAAACCCACCTCCCTCCTTTCCATCCAAAACCTCCCAAAGGGTCTATCCTCCACAAAACCAACCAATATTATTCAAAGCACTAAACTATCCATAGAAGCCACAGCAATAGCAGGAGCAATATTCTCAACACTTGGAGCCTGTGACCCTGCTTATGCTGTACAACAAATAGCTGAACTAGCAGAAGGTAGTGATAACCGTGGCATAGCACTGTTATTACCAATTATTCCAGCCATAGCATGGGTTTTGTTCAACATTCTTCAGCCAGCACTTAACCAAATCAACCGCATGCGCAACAAAGATGTTATCCTTGGTTTTGGTGTTGGAGGGTTGGCTTCATATTTGGGATTGGTGTCAGCACCTGATGCATTAGCTAGTGAGATTGGTATGATTGCTGAAGCTGCTGCTAATGACAATAGAGGAAAGCTTTTGCTTTTGGTGGTTTCACCTGCTATTCTTTGGGTTCTTTATAATATCTTGCAGCCTGCTTTGAACCAGATTAATAGGATGAGAAGCAAGTGA 600 0.43 MAATTIASFAMINAKFPNPTNTKLITSKPTSLLSIQNLPKGLSSTKPTNIIQSTKLSIEATAIAGAIFSTLGACDPAYAVQQIAELAEGSDNRGIALLLPIIPAIAWVLFNILQPALNQINRMRNKDVILGFGVGGLASYLGLVSAPDALASEIGMIAEAAANDNRGKLLLLVVSPAILWVLYNILQPALNQINRMRSK* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0588 199 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 199 IPR038760 GO:0009523
Lan12g0588 199 Hamap Photosystem II protein Y [psbY]. 91 125 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lan12g0588 199 Pfam Photosystem II protein Y (PsbY) 91 123 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lan12g0588 199 Pfam Photosystem II protein Y (PsbY) 164 196 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lan12g0588 199 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0588 Lan-Chr12 12726409 12727295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0588 K02723 - twl:120000531 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0588 12 12726409 12727295 Lan14g0212 14 2473034 2473936 PCT
Lan12g0588 12 12726409 12727295 Lan3g1453 3 26086675 26087623 PCT