Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0941 ATGGCTTGTGTGAAATTGGGTTCCAAGGCTGATGCATTCCAACGTCAAGGGCAAGCCTGGTTCTGCACAACTGGGCTTCCCAGTGATTTAGTTGTTGAAGTTGGTGAAATGTCCTTCCATCTTCACAAGTTCCCTTTGCTATCGAGAAGTGGTGTTATATCCAGATTGATTACTGAAACTCCAGAATCAGAGGAAGAATGTGTCATACACCTCCTTAATATTCCCGGCGGGGCCAAAACCTTTGAACTTGTTATAAAATTCTGCTATGGCGTGAAACTTGAACTTACAGCATCAAATGTTGTGTACATCTGGTGTGCTGCCGAGCATCTTGAAATGACCGAGGAACATGGTGAAGGCAATCTTATTTCACAAGCTAAAACCTTTTTCAGTGAAGTGGTCCTCCGAAGTTGGAAAGACTCTCTAAGAGCACTTCAAACTTGTGATGATGTACTTTCCCATGCTGAAGCACTCCACATTGTGAAAAGCTGCATTGAATCGCTTGCAGCAAATGCATCTAATCACACAAATTTGTTAGGATGGCCTGTACTGGAGCATGGTGGGCCCGTGCAGGGCCTTGGTGGAAGTGTTTTGTGGAATGGAATAAGTACTGCGGCAAGACCAAACAATTCAAGTTCAGATTGGTGGTATGAGGATGTAGCAAATTTAAGTTTACCTCATTATAAGAGGTTGGTAGCTGCTATGGAATCTCAGGGCATTAGGCAGGATATTATTGCCGGTTCTCTTGCTTTCTATGCTAAAAGGTATCTTCCAGGGTTGAATCGACGTCATGTTGCCGGTGAGTCCAGTACCCATCTGATTTTGGGGTCTCCACCATCCGAAGAAGACCAGAAGATTCTTGTGGAAGAGATTGAACGATTACTCCCAATGGAGAAGGGCCTGGTCCAGACAAAGTTCCTGTTTGGTCTACTTCGAACAGGCATGATTCTTCGAGTGAGCTACTCTTGCACGTCAAATTTAGAGAAACGGATCGGGATGCAGCTTGATCAAGCTGCTTTGGAAGATCTCTTGATGCCTACGTTCTCATATTCAATGGAGACACTTTACAACGTTGACTGTGTGCAAAGAATTCTTGATCATTTCCTTGTTATGGATCAGGATACTGGTGCTGCCTCTCCATGTTCAATTGATGATGGCCAGTTGATTGGATCACCTTCACTTACATCAATCACCATGGTTGCCAAGCTGATTGATGGTTACCTGGCCGAGGTTGCCCCAGATGTTAACTTAAAACTTCCGAAGTTTGAAGCTCTTGCTGCTGCTGTTCCAGAGTATGCAAGGCCTTTAGATGATGGTTTATACCGTGCTATAGACATTTATTTGAAGTCTCACCCTGAGTTGGTGGAATCCGAGAGAGAGCAACTATGCCGGCTGATGGACTGCCAGAAGCTCTCATTAGAAGCATGCACCCATGCAGCACAGAACGAGCGGCTACCAATCAGAACAATAGTTCAAGTTCTATTTTTCGAGCAACTCCAGCTCCGGACCTCAATTGCTGGTTGCTTTCTAGTTTCAGATAATCTTGATGGGTCAAGACAGTTAAGAAGTGGTTTGATCGGAAATAACGAAGGTGGCTGGCCATCCGCTGTGAAGGAGAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTATCTGAGCTTGAGAAGGAATGCTTAAACATGCGGCAGGAGATCGAGAAGGTTGGTCGTGGAAAGGGATCAAGCACTTGGGGAATATTGTCTAAGGTGTTCGGGTTTAAGATAAAATCTCAGATTTGCAGTGCTGAAGAAGGATCAGTTAGCAACCAGAATAATGGAAATAGTAAGGTTGAGAAGTTGAAGAACAGACTTGTAGTGAAACAGAAGAAAAGTTCTTATATTAGTGATAAAGAATCTGTCTCTTCAATTGTTCCTTCTTAG 1926 0.4393 MACVKLGSKADAFQRQGQAWFCTTGLPSDLVVEVGEMSFHLHKFPLLSRSGVISRLITETPESEEECVIHLLNIPGGAKTFELVIKFCYGVKLELTASNVVYIWCAAEHLEMTEEHGEGNLISQAKTFFSEVVLRSWKDSLRALQTCDDVLSHAEALHIVKSCIESLAANASNHTNLLGWPVLEHGGPVQGLGGSVLWNGISTAARPNNSSSDWWYEDVANLSLPHYKRLVAAMESQGIRQDIIAGSLAFYAKRYLPGLNRRHVAGESSTHLILGSPPSEEDQKILVEEIERLLPMEKGLVQTKFLFGLLRTGMILRVSYSCTSNLEKRIGMQLDQAALEDLLMPTFSYSMETLYNVDCVQRILDHFLVMDQDTGAASPCSIDDGQLIGSPSLTSITMVAKLIDGYLAEVAPDVNLKLPKFEALAAAVPEYARPLDDGLYRAIDIYLKSHPELVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRTIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGLIGNNEGGWPSAVKENQVLKVGMDNMRMRVSELEKECLNMRQEIEKVGRGKGSSTWGILSKVFGFKIKSQICSAEEGSVSNQNNGNSKVEKLKNRLVVKQKKSSYISDKESVSSIVPS* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0941 641 Coils Coil 539 566 - -
Lan3g0941 641 ProSiteProfiles NPH3 domain profile. 213 499 IPR027356 -
Lan3g0941 641 CDD BTB_POZ_NPY3-like 19 122 - -
Lan3g0941 641 Gene3D Potassium Channel Kv1.1; Chain A 11 129 IPR011333 -
Lan3g0941 641 Pfam NPH3 family 213 475 IPR027356 -
Lan3g0941 641 PANTHER - 1 614 - -
Lan3g0941 641 SUPERFAMILY POZ domain 16 114 IPR011333 -
Lan3g0941 641 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Lan3g0941 641 PANTHER OS12G0117600 PROTEIN 1 614 IPR043454 -
Lan3g0941 641 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0941 Lan-Chr3 20571196 20575147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0941 8 569 EF-hand Containing Proteins AT3G44820 45.983 6.43e-177 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0941 - - gmx:100779836 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0229 15 2571501 2575998 Lan3g0941 3 20571196 20575147 LSH
Lan14g0065 14 925311 930398 Lan3g0941 3 20571196 20575147 LSH