Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0216 ATGGGTTTTGCCAAATGGGTCAATTTGTTGATGGTTTTTCATTTCTTTGCTGCAACACCCATCTTCTCACATTCCAGCTCCTTCACCTCCAAGTTCCTTGATTTAGCTAAGGAGCCTGAGATCTTTGATTGGATGGTGGACATAAGAAGGAAGATTCATGAAAATCCAGAACTTGGTTATGAGGAATTTGAGACCAGTAAGCTGATAAGATCAGAATTAACAAAATTGAGTATCCCATACAAATACCCAGTTGCAGTTACTGGTGTTGTTGGATTCATAGGGACTGGAAGCTCTCCTTTTGTTGCTTTAAGAGCTGACATGGATGCTTTACCTATACAGGAGCTGGTGGAGTGGGAGCATAAGAGTAAAGTAGCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATCCTCATAGCGCATGAGAAAGAGATACCAGGTACTGTTGTTCTTGTTTTTCAACCAGGAGAGGAAGGACTTGGAGGGGCTAAGAAAATCATAGATAGTGGAGCTTTAGAAAATGTTTCTGCAATATTCGGATTGCATGTTGACCCTACCCTACCCATAGGTGAAGTGTCTTCTAGGTCTGGTCCCTTATTTGCAGGAAGTGGCTTCTTTGAAGCAATAATAAGTGGCAAGGGAGGCCATGCTGCTATGCCTCAGTATTCTATAGATCCAATAGTTGCAGCTTCTAATGTGGTTCTTAGCTTACAACATCTTATTTCTCGTGAGTCTGATCCTCTTGACTCCAAGGTTTTGACTGTAGCAAAATTCGGAGGAGGTGATGCACTCAATGTTATTCCAGATTCTATAACAATTGGTGGCACCTTCCGAGCTTTTTCAAGAGAAAACATGATGCATCTAAAACAACGGATTAAGCAGGTTGTCATTGGGCAAGCTTCTGTGTATAGATGTAATGCAACAGTGAACTTCCTTGATGAAGAGATACCTTATATGCCTCCAACTTTTAACAATGATGAGTTGCATGAGTTATTCCAAAGTGTTGCTGTGAACTTGTTTGGTGTCAATAAAGTGAGTAGCTCAGAACTAGTTATGGCATCTGAGGACTTTGCATCTTATCAAGAGGCTATACCTGGTTACATGTTCCTCCTTGGAATTAGGAATATCTCTGTTAAAAGTCTTGCAATTCCACACAATCCTCATTTCACAGTCGATGAAGATGCACTTCCTTATGGAGCTGCAATTCATGCATCATTAGCTTCTAACTATCTTCTCAAACTTCATCAGAATCTGCCACTGGTAGAGGAGAAATATAATGATGAATTATAA 1317 0.407 MGFAKWVNLLMVFHFFAATPIFSHSSSFTSKFLDLAKEPEIFDWMVDIRRKIHENPELGYEEFETSKLIRSELTKLSIPYKYPVAVTGVVGFIGTGSSPFVALRADMDALPIQELVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILIAHEKEIPGTVVLVFQPGEEGLGGAKKIIDSGALENVSAIFGLHVDPTLPIGEVSSRSGPLFAGSGFFEAIISGKGGHAAMPQYSIDPIVAASNVVLSLQHLISRESDPLDSKVLTVAKFGGGDALNVIPDSITIGGTFRAFSRENMMHLKQRIKQVVIGQASVYRCNATVNFLDEEIPYMPPTFNNDELHELFQSVAVNLFGVNKVSSSELVMASEDFASYQEAIPGYMFLLGIRNISVKSLAIPHNPHFTVDEDALPYGAAIHASLASNYLLKLHQNLPLVEEKYNDEL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0216 438 PIRSF Amidohydrol_AmhX 30 424 IPR017439 GO:0016787
Lan3g0216 438 Gene3D Zn peptidases 45 405 - -
Lan3g0216 438 SUPERFAMILY Bacterial exopeptidase dimerisation domain 210 329 IPR036264 -
Lan3g0216 438 PANTHER AUXIN CONJUGATE HYDROLASE 1 438 - -
Lan3g0216 438 Pfam Peptidase family M20/M25/M40 102 417 IPR002933 GO:0016787
Lan3g0216 438 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 438 IPR017439 GO:0016787
Lan3g0216 438 CDD M20_IAA_Hyd 45 420 IPR044757 GO:0009850|GO:0016787
Lan3g0216 438 Pfam Peptidase dimerisation domain 211 305 IPR011650 -
Lan3g0216 438 Coils Coil 431 438 - -
Lan3g0216 438 Gene3D - 210 328 - -
Lan3g0216 438 SUPERFAMILY Zn-dependent exopeptidases 40 420 - -
Lan3g0216 438 TIGRFAM amidohydrolases: amidohydrolase 45 407 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0216 Lan-Chr3 1392831 1395943 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0216 K21604 - gmx:100794121 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2124 6 31750283 31753842 Lan3g0216 3 1392831 1395943 LSH
Lan3g0216 3 1392831 1395943 Lan5g0605 5 12302129 12308232 PCT
Lan5g0605 5 12302129 12308232 Lan3g0216 3 1392831 1395943 PCT