Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0075 ATGGATAACAAAACTACCCTTTTGGTCTTGGTCCTTGTTCTTTGTCATGGAGTGGCTGCAACAATGGGATTTTGGATGAAAGAGTTGGAACAAGATAAACATCATAGGCATCCAATGTCAGATAAGTTATTTTTGATGCAACACTCAAAGCGTATAGTGAAGACTGATGCTGGAGAAATGAGAGTGCTAGAAAGCTATGGTGGTAGGATTATGGATAGAAGATTGAATATTGGTTTCATTACTATGGAACCAAGGTCACTTTTCATTCCTCAGTATCTTGATTCTACTTTCATCATATTCGTGCGTGAAGGGGAAGCAAAGGTTGGATTTGTGTGTAAATCTACAATGGTGGAAAAGCACTTGAAGATGGGTGATGTGTATAGAATTCCAGCTGGTTCTGCATTCTATTTGGTGAATACAATGGAAGATCAGAGACTTCACATAATCAGCAGCATTGACCCCTCTGAGAGCATTGGAATCAGTGTTTTCCAGTCATTCTATGTTGGAGGAGGAGCCAATCCTGCATCAATACTTTCTGGATTTTCGCCTGAAATCATTGAAACTGCTTTTAATGTATCAGGGGCAGAGTTGAAGAAAATATTCACAAGGCAACATGAGGGACCAATTGTGCATTTGGATAATTCACTTTCTACAAACATATGGACAAAATTTCTTCAAATGAATGGAGATGATAAACTGCAACACCTTAAGAAAATGGTCCTTGAAGACCAACATGAGCCTGATGCTGATGTTGATAATGATGATGAAGAAGAACAAGAAGAAGAACAAGTAACAAGATTATCATGGAGGAAGCTCTTGGAATCTGTGTTTAAGAATGATAAGAACAAAGAGACAAGGGAAAAGGTTGTCCATGATTCTCATCATTCTTGTAACCTCTATGATAGAAACCCAGATTTCAAAAATGATTATGGTTGGAGCACTGCTATAGATGGCTCTGATTATCATCCACTCAAAAAGTCAGGCATTGGAATTTATCATGTCAATCTCTCAGCGGGATCAATGATGACACCCCATGTGAATCCAAGGGCAACAGAATATGGCATAGTGTTAAAGGGTTCAGGTAGAATCCAAATTATATTTCCAAATGGAAGCAATGCAATGGACACTGATATAAAAGAAGGTGATGTATTTTTTGTTCCAAGATACTTTCCATTTTGCCAAATAGCATCAAGGAATGGAGCACTAGAGTTCTTTGGGTTCACCACCTCAGCAAGGAAGAACAAGCCACAGTTTCTAGTTGGTGCAACCTCACTCATGAGAACCATGATGGGGCCTGAACTTGCAGCAGCATTTGGAGTTAGTGAAGAAACAATGAAGCGTGTGGTTAATGCACAACATGAGGGTGTGATTCTACCTACTCCATGGGCTCAACAACATGTACATGCACATGCACATGCACATGCAAAGAAGAAGAAGAAGAAGAAGAAGAATATAGAAGTTACACTTCCAACGCTTATTAGGAATGAAGTGATTGTGGGTTTTTGA 1506 0.3918 MDNKTTLLVLVLVLCHGVAATMGFWMKELEQDKHHRHPMSDKLFLMQHSKRIVKTDAGEMRVLESYGGRIMDRRLNIGFITMEPRSLFIPQYLDSTFIIFVREGEAKVGFVCKSTMVEKHLKMGDVYRIPAGSAFYLVNTMEDQRLHIISSIDPSESIGISVFQSFYVGGGANPASILSGFSPEIIETAFNVSGAELKKIFTRQHEGPIVHLDNSLSTNIWTKFLQMNGDDKLQHLKKMVLEDQHEPDADVDNDDEEEQEEEQVTRLSWRKLLESVFKNDKNKETREKVVHDSHHSCNLYDRNPDFKNDYGWSTAIDGSDYHPLKKSGIGIYHVNLSAGSMMTPHVNPRATEYGIVLKGSGRIQIIFPNGSNAMDTDIKEGDVFFVPRYFPFCQIASRNGALEFFGFTTSARKNKPQFLVGATSLMRTMMGPELAAAFGVSEETMKRVVNAQHEGVILPTPWAQQHVHAHAHAHAKKKKKKKKNIEVTLPTLIRNEVIVGF* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0075 501 SMART Cupin_1_3 297 446 IPR006045 -
Lan3g0075 501 SMART Cupin_1_3 44 198 IPR006045 -
Lan3g0075 501 MobiDBLite consensus disorder prediction 247 262 - -
Lan3g0075 501 Gene3D Jelly Rolls 289 461 IPR014710 -
Lan3g0075 501 MobiDBLite consensus disorder prediction 246 265 - -
Lan3g0075 501 PANTHER OS03G0336100 PROTEIN-RELATED 1 465 - -
Lan3g0075 501 Gene3D Jelly Rolls 33 222 IPR014710 -
Lan3g0075 501 PANTHER OS03G0336100 PROTEIN 1 465 - -
Lan3g0075 501 SUPERFAMILY RmlC-like cupins 26 454 IPR011051 -
Lan3g0075 501 Pfam Cupin 298 445 IPR006045 -
Lan3g0075 501 Pfam Cupin 52 196 IPR006045 -
Lan3g0075 501 CDD cupin_7S_vicilin-like_N 52 212 - -
Lan3g0075 501 CDD cupin_7S_vicilin-like_C 304 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0075 Lan-Chr3 504907 507698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0075 52 458 Miscellaneous Gene Families AT2G18540 29.157 3.85e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0075 - - lang:109342739 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0124 10 764878 767810 Lan3g0075 3 504907 507698 LSH
Lan3g0075 3 504907 507698 Lan13g0368 13 2461347 2464216 PCT
Lan13g0368 13 2461347 2464216 Lan3g0075 3 504907 507698 PCT